Strain Fitness in Pseudomonas sp. RS175 around PFR28_00184

Experiment: sn-glycero-3-phosphocholine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00182 and PFR28_00183 overlap by 4 nucleotidesPFR28_00183 and PFR28_00184 are separated by 115 nucleotidesPFR28_00184 and PFR28_00185 are separated by 26 nucleotides PFR28_00182: PFR28_00182 - Intermembrane phospholipid transport system binding protein MlaC, at 205,414 to 206,067 _00182 PFR28_00183: PFR28_00183 - hypothetical protein, at 206,064 to 206,381 _00183 PFR28_00184: PFR28_00184 - hypothetical protein, at 206,497 to 206,736 _00184 PFR28_00185: PFR28_00185 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 206,763 to 208,028 _00185 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 205.561 kb on + strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.562 kb on - strand, within PFR28_00182at 205.585 kb on + strand, within PFR28_00182at 205.585 kb on + strand, within PFR28_00182at 205.586 kb on - strand, within PFR28_00182at 205.586 kb on - strand, within PFR28_00182at 205.632 kb on + strand, within PFR28_00182at 205.632 kb on + strand, within PFR28_00182at 205.660 kb on + strand, within PFR28_00182at 205.660 kb on + strand, within PFR28_00182at 205.661 kb on - strand, within PFR28_00182at 205.661 kb on - strand, within PFR28_00182at 205.732 kb on + strand, within PFR28_00182at 205.732 kb on + strand, within PFR28_00182at 205.733 kb on - strand, within PFR28_00182at 205.733 kb on - strand, within PFR28_00182at 205.753 kb on + strand, within PFR28_00182at 205.753 kb on + strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.754 kb on - strand, within PFR28_00182at 205.807 kb on - strand, within PFR28_00182at 205.861 kb on + strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.862 kb on - strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.863 kb on + strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.864 kb on - strand, within PFR28_00182at 205.899 kb on + strand, within PFR28_00182at 206.371 kb on + strandat 206.371 kb on + strandat 206.452 kb on + strandat 206.452 kb on + strandat 206.506 kb on + strandat 206.506 kb on + strandat 206.544 kb on + strand, within PFR28_00184at 206.544 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184at 206.644 kb on + strand, within PFR28_00184

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C)
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205,561 + PFR28_00182 0.22 +1.8
205,562 - PFR28_00182 0.23 -1.3
205,562 - PFR28_00182 0.23 +1.5
205,562 - PFR28_00182 0.23 +2.9
205,585 + PFR28_00182 0.26 +5.0
205,585 + PFR28_00182 0.26 +1.2
205,586 - PFR28_00182 0.26 +1.4
205,586 - PFR28_00182 0.26 -0.3
205,632 + PFR28_00182 0.33 -2.2
205,632 + PFR28_00182 0.33 -1.3
205,660 + PFR28_00182 0.38 +0.8
205,660 + PFR28_00182 0.38 +1.6
205,661 - PFR28_00182 0.38 +1.2
205,661 - PFR28_00182 0.38 +3.3
205,732 + PFR28_00182 0.49 -0.3
205,732 + PFR28_00182 0.49 +3.0
205,733 - PFR28_00182 0.49 +0.1
205,733 - PFR28_00182 0.49 +0.7
205,753 + PFR28_00182 0.52 +2.4
205,753 + PFR28_00182 0.52 +2.0
205,754 - PFR28_00182 0.52 -3.2
205,754 - PFR28_00182 0.52 +1.1
205,754 - PFR28_00182 0.52 -0.9
205,754 - PFR28_00182 0.52 +4.3
205,754 - PFR28_00182 0.52 +2.6
205,754 - PFR28_00182 0.52 -0.6
205,807 - PFR28_00182 0.60 +2.1
205,861 + PFR28_00182 0.68 -0.6
205,862 - PFR28_00182 0.69 +2.8
205,862 - PFR28_00182 0.69 +3.0
205,862 - PFR28_00182 0.69 +2.3
205,862 - PFR28_00182 0.69 -0.2
205,862 - PFR28_00182 0.69 +2.0
205,863 + PFR28_00182 0.69 +1.7
205,863 + PFR28_00182 0.69 +1.2
205,863 + PFR28_00182 0.69 +1.8
205,863 + PFR28_00182 0.69 +0.7
205,863 + PFR28_00182 0.69 +0.7
205,864 - PFR28_00182 0.69 -0.6
205,864 - PFR28_00182 0.69 +0.7
205,864 - PFR28_00182 0.69 +2.2
205,899 + PFR28_00182 0.74 +2.0
206,371 + -1.1
206,371 + +1.2
206,452 + +0.9
206,452 + +0.8
206,506 + +1.7
206,506 + -3.2
206,544 + PFR28_00184 0.20 +0.3
206,544 + PFR28_00184 0.20 -2.5
206,644 + PFR28_00184 0.61 -0.3
206,644 + PFR28_00184 0.61 -0.3
206,644 + PFR28_00184 0.61 -1.1
206,644 + PFR28_00184 0.61 -1.6
206,644 + PFR28_00184 0.61 -0.6
206,644 + PFR28_00184 0.61 -1.9
206,644 + PFR28_00184 0.61 +0.4
206,644 + PFR28_00184 0.61 -0.3
206,644 + PFR28_00184 0.61 -0.6
206,644 + PFR28_00184 0.61 -1.1
206,644 + PFR28_00184 0.61 -0.9

Or see this region's nucleotide sequence