Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23580

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23575 and ABIE41_RS23580 are separated by 109 nucleotidesABIE41_RS23580 and ABIE41_RS23585 are separated by 110 nucleotidesABIE41_RS23585 and ABIE41_RS23590 are separated by 174 nucleotides ABIE41_RS23575: ABIE41_RS23575 - BMP family protein, at 4,859,382 to 4,860,386 _RS23575 ABIE41_RS23580: ABIE41_RS23580 - aldehyde dehydrogenase family protein, at 4,860,496 to 4,861,941 _RS23580 ABIE41_RS23585: ABIE41_RS23585 - glutathione S-transferase family protein, at 4,862,052 to 4,862,708 _RS23585 ABIE41_RS23590: ABIE41_RS23590 - polyhydroxyalkanoate depolymerase, at 4,862,883 to 4,864,097 _RS23590 Position (kb) 4860 4861 4862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4859.838 kb on + strand, within ABIE41_RS23575at 4859.839 kb on - strand, within ABIE41_RS23575at 4859.873 kb on - strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.918 kb on + strand, within ABIE41_RS23575at 4859.919 kb on - strand, within ABIE41_RS23575at 4859.919 kb on - strand, within ABIE41_RS23575at 4859.919 kb on - strand, within ABIE41_RS23575at 4859.919 kb on - strand, within ABIE41_RS23575at 4859.919 kb on - strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.998 kb on + strand, within ABIE41_RS23575at 4859.999 kb on - strand, within ABIE41_RS23575at 4859.999 kb on - strand, within ABIE41_RS23575at 4860.238 kb on + strand, within ABIE41_RS23575at 4860.239 kb on - strand, within ABIE41_RS23575at 4860.509 kb on + strandat 4860.509 kb on + strandat 4860.530 kb on + strandat 4860.530 kb on + strandat 4860.530 kb on + strandat 4860.546 kb on - strandat 4860.569 kb on + strandat 4860.570 kb on - strandat 4860.570 kb on - strandat 4860.753 kb on - strand, within ABIE41_RS23580at 4860.753 kb on - strand, within ABIE41_RS23580at 4860.851 kb on + strand, within ABIE41_RS23580at 4860.851 kb on + strand, within ABIE41_RS23580at 4860.851 kb on + strand, within ABIE41_RS23580at 4860.852 kb on - strand, within ABIE41_RS23580at 4860.852 kb on - strand, within ABIE41_RS23580at 4860.929 kb on + strand, within ABIE41_RS23580at 4860.929 kb on + strand, within ABIE41_RS23580at 4860.929 kb on + strand, within ABIE41_RS23580at 4860.930 kb on - strand, within ABIE41_RS23580at 4860.930 kb on - strand, within ABIE41_RS23580at 4861.445 kb on + strand, within ABIE41_RS23580at 4862.149 kb on + strand, within ABIE41_RS23585at 4862.149 kb on + strand, within ABIE41_RS23585at 4862.182 kb on + strand, within ABIE41_RS23585at 4862.182 kb on + strand, within ABIE41_RS23585at 4862.182 kb on + strand, within ABIE41_RS23585at 4862.182 kb on + strand, within ABIE41_RS23585at 4862.183 kb on - strand, within ABIE41_RS23585at 4862.183 kb on - strand, within ABIE41_RS23585at 4862.183 kb on - strand, within ABIE41_RS23585at 4862.183 kb on - strand, within ABIE41_RS23585at 4862.183 kb on - strand, within ABIE41_RS23585at 4862.212 kb on + strand, within ABIE41_RS23585at 4862.212 kb on + strand, within ABIE41_RS23585at 4862.212 kb on + strand, within ABIE41_RS23585at 4862.213 kb on - strand, within ABIE41_RS23585at 4862.213 kb on - strand, within ABIE41_RS23585at 4862.251 kb on + strand, within ABIE41_RS23585at 4862.251 kb on + strand, within ABIE41_RS23585at 4862.252 kb on - strand, within ABIE41_RS23585at 4862.252 kb on - strand, within ABIE41_RS23585at 4862.263 kb on + strand, within ABIE41_RS23585at 4862.485 kb on + strand, within ABIE41_RS23585at 4862.485 kb on + strand, within ABIE41_RS23585at 4862.522 kb on + strand, within ABIE41_RS23585at 4862.671 kb on + strandat 4862.671 kb on + strandat 4862.672 kb on - strandat 4862.672 kb on - strandat 4862.672 kb on - strandat 4862.672 kb on - strandat 4862.739 kb on + strandat 4862.739 kb on + strandat 4862.740 kb on - strandat 4862.740 kb on - strandat 4862.740 kb on - strandat 4862.889 kb on + strandat 4862.889 kb on + strandat 4862.890 kb on - strandat 4862.890 kb on - strandat 4862.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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4,859,838 + ABIE41_RS23575 0.45 -0.3
4,859,839 - ABIE41_RS23575 0.45 +1.8
4,859,873 - ABIE41_RS23575 0.49 +0.2
4,859,918 + ABIE41_RS23575 0.53 +0.2
4,859,918 + ABIE41_RS23575 0.53 +1.5
4,859,918 + ABIE41_RS23575 0.53 +0.6
4,859,918 + ABIE41_RS23575 0.53 -0.2
4,859,918 + ABIE41_RS23575 0.53 +0.7
4,859,918 + ABIE41_RS23575 0.53 +0.1
4,859,918 + ABIE41_RS23575 0.53 +2.1
4,859,918 + ABIE41_RS23575 0.53 -1.8
4,859,919 - ABIE41_RS23575 0.53 -0.2
4,859,919 - ABIE41_RS23575 0.53 +0.1
4,859,919 - ABIE41_RS23575 0.53 +1.8
4,859,919 - ABIE41_RS23575 0.53 -2.0
4,859,919 - ABIE41_RS23575 0.53 -0.1
4,859,998 + ABIE41_RS23575 0.61 +2.3
4,859,998 + ABIE41_RS23575 0.61 +0.2
4,859,998 + ABIE41_RS23575 0.61 +0.1
4,859,998 + ABIE41_RS23575 0.61 +1.6
4,859,998 + ABIE41_RS23575 0.61 -1.1
4,859,998 + ABIE41_RS23575 0.61 +0.1
4,859,999 - ABIE41_RS23575 0.61 +1.3
4,859,999 - ABIE41_RS23575 0.61 -1.6
4,860,238 + ABIE41_RS23575 0.85 -1.0
4,860,239 - ABIE41_RS23575 0.85 +0.6
4,860,509 + +0.5
4,860,509 + -0.4
4,860,530 + +0.3
4,860,530 + +1.7
4,860,530 + -0.2
4,860,546 - +0.1
4,860,569 + -0.8
4,860,570 - +0.0
4,860,570 - -0.0
4,860,753 - ABIE41_RS23580 0.18 +0.0
4,860,753 - ABIE41_RS23580 0.18 +0.6
4,860,851 + ABIE41_RS23580 0.25 -0.2
4,860,851 + ABIE41_RS23580 0.25 +0.7
4,860,851 + ABIE41_RS23580 0.25 -2.1
4,860,852 - ABIE41_RS23580 0.25 -0.2
4,860,852 - ABIE41_RS23580 0.25 -1.3
4,860,929 + ABIE41_RS23580 0.30 +0.1
4,860,929 + ABIE41_RS23580 0.30 -0.8
4,860,929 + ABIE41_RS23580 0.30 +0.0
4,860,930 - ABIE41_RS23580 0.30 -1.8
4,860,930 - ABIE41_RS23580 0.30 -0.4
4,861,445 + ABIE41_RS23580 0.66 -0.8
4,862,149 + ABIE41_RS23585 0.15 -0.8
4,862,149 + ABIE41_RS23585 0.15 -0.8
4,862,182 + ABIE41_RS23585 0.20 -1.0
4,862,182 + ABIE41_RS23585 0.20 -1.2
4,862,182 + ABIE41_RS23585 0.20 -0.2
4,862,182 + ABIE41_RS23585 0.20 -0.7
4,862,183 - ABIE41_RS23585 0.20 +2.2
4,862,183 - ABIE41_RS23585 0.20 -1.0
4,862,183 - ABIE41_RS23585 0.20 +0.1
4,862,183 - ABIE41_RS23585 0.20 -0.4
4,862,183 - ABIE41_RS23585 0.20 +1.8
4,862,212 + ABIE41_RS23585 0.24 -0.1
4,862,212 + ABIE41_RS23585 0.24 -3.2
4,862,212 + ABIE41_RS23585 0.24 +0.7
4,862,213 - ABIE41_RS23585 0.25 +0.7
4,862,213 - ABIE41_RS23585 0.25 +0.5
4,862,251 + ABIE41_RS23585 0.30 +0.4
4,862,251 + ABIE41_RS23585 0.30 -0.4
4,862,252 - ABIE41_RS23585 0.30 +2.1
4,862,252 - ABIE41_RS23585 0.30 -0.8
4,862,263 + ABIE41_RS23585 0.32 +1.1
4,862,485 + ABIE41_RS23585 0.66 -0.2
4,862,485 + ABIE41_RS23585 0.66 +0.7
4,862,522 + ABIE41_RS23585 0.72 -1.3
4,862,671 + +2.6
4,862,671 + -0.5
4,862,672 - -0.2
4,862,672 - -0.1
4,862,672 - +0.4
4,862,672 - +1.1
4,862,739 + +0.1
4,862,739 + -0.5
4,862,740 - -0.4
4,862,740 - +0.5
4,862,740 - +0.3
4,862,889 + -1.2
4,862,889 + -0.1
4,862,890 - +0.2
4,862,890 - +1.0
4,862,899 - +0.7

Or see this region's nucleotide sequence