Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18740 and ABIE41_RS18745 overlap by 4 nucleotides ABIE41_RS18745 and ABIE41_RS18750 overlap by 8 nucleotides
ABIE41_RS18740: ABIE41_RS18740 - branched-chain amino acid ABC transporter permease, at 3,858,596 to 3,859,678
_RS18740
ABIE41_RS18745: ABIE41_RS18745 - ABC transporter ATP-binding protein, at 3,859,675 to 3,860,478
_RS18745
ABIE41_RS18750: ABIE41_RS18750 - ABC transporter permease, at 3,860,471 to 3,862,720
_RS18750
Position (kb)
3859
3860
3861 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3858.756 kb on - strand, within ABIE41_RS18740 at 3858.756 kb on - strand, within ABIE41_RS18740 at 3858.807 kb on - strand, within ABIE41_RS18740 at 3858.954 kb on + strand, within ABIE41_RS18740 at 3858.955 kb on - strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.001 kb on + strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.002 kb on - strand, within ABIE41_RS18740 at 3859.044 kb on - strand, within ABIE41_RS18740 at 3859.061 kb on + strand, within ABIE41_RS18740 at 3859.148 kb on + strand, within ABIE41_RS18740 at 3859.148 kb on + strand, within ABIE41_RS18740 at 3859.149 kb on - strand, within ABIE41_RS18740 at 3859.149 kb on - strand, within ABIE41_RS18740 at 3859.149 kb on - strand, within ABIE41_RS18740 at 3859.149 kb on - strand, within ABIE41_RS18740 at 3859.152 kb on - strand, within ABIE41_RS18740 at 3859.196 kb on + strand, within ABIE41_RS18740 at 3859.196 kb on + strand, within ABIE41_RS18740 at 3859.196 kb on + strand, within ABIE41_RS18740 at 3859.197 kb on - strand, within ABIE41_RS18740 at 3859.197 kb on - strand, within ABIE41_RS18740 at 3859.197 kb on - strand, within ABIE41_RS18740 at 3859.197 kb on - strand, within ABIE41_RS18740 at 3859.197 kb on - strand, within ABIE41_RS18740 at 3859.469 kb on + strand, within ABIE41_RS18740 at 3859.469 kb on + strand, within ABIE41_RS18740 at 3859.469 kb on + strand, within ABIE41_RS18740 at 3859.469 kb on + strand, within ABIE41_RS18740 at 3859.470 kb on - strand, within ABIE41_RS18740 at 3859.470 kb on - strand, within ABIE41_RS18740 at 3859.470 kb on - strand, within ABIE41_RS18740 at 3859.623 kb on - strand at 3859.623 kb on - strand at 3859.969 kb on + strand, within ABIE41_RS18745 at 3859.969 kb on + strand, within ABIE41_RS18745 at 3859.969 kb on + strand, within ABIE41_RS18745 at 3859.969 kb on + strand, within ABIE41_RS18745 at 3859.970 kb on - strand, within ABIE41_RS18745 at 3859.970 kb on - strand, within ABIE41_RS18745 at 3860.017 kb on + strand, within ABIE41_RS18745 at 3860.017 kb on + strand, within ABIE41_RS18745 at 3860.125 kb on - strand, within ABIE41_RS18745 at 3860.162 kb on - strand, within ABIE41_RS18745 at 3860.162 kb on - strand, within ABIE41_RS18745 at 3860.308 kb on + strand, within ABIE41_RS18745 at 3860.308 kb on + strand, within ABIE41_RS18745 at 3860.308 kb on + strand, within ABIE41_RS18745 at 3860.309 kb on - strand, within ABIE41_RS18745 at 3860.309 kb on - strand, within ABIE41_RS18745 at 3860.309 kb on - strand, within ABIE41_RS18745 at 3860.309 kb on - strand, within ABIE41_RS18745 at 3860.373 kb on + strand, within ABIE41_RS18745 at 3860.374 kb on - strand, within ABIE41_RS18745 at 3860.374 kb on - strand, within ABIE41_RS18745 at 3860.374 kb on - strand, within ABIE41_RS18745 at 3860.440 kb on + strand at 3860.441 kb on - strand at 3860.441 kb on - strand at 3860.441 kb on - strand at 3860.441 kb on - strand at 3860.543 kb on + strand at 3860.543 kb on + strand at 3860.543 kb on + strand at 3860.543 kb on + strand at 3860.544 kb on - strand at 3860.544 kb on - strand at 3860.544 kb on - strand at 3860.747 kb on + strand, within ABIE41_RS18750 at 3860.748 kb on - strand, within ABIE41_RS18750 at 3860.748 kb on - strand, within ABIE41_RS18750 at 3860.850 kb on - strand, within ABIE41_RS18750 at 3861.080 kb on - strand, within ABIE41_RS18750 at 3861.308 kb on + strand, within ABIE41_RS18750 at 3861.309 kb on - strand, within ABIE41_RS18750 at 3861.309 kb on - strand, within ABIE41_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 3,858,756 - ABIE41_RS18740 0.15 -3.0 3,858,756 - ABIE41_RS18740 0.15 -0.4 3,858,807 - ABIE41_RS18740 0.19 +0.4 3,858,954 + ABIE41_RS18740 0.33 +1.4 3,858,955 - ABIE41_RS18740 0.33 +0.3 3,859,001 + ABIE41_RS18740 0.37 +0.1 3,859,001 + ABIE41_RS18740 0.37 +0.1 3,859,001 + ABIE41_RS18740 0.37 +0.9 3,859,001 + ABIE41_RS18740 0.37 +0.4 3,859,001 + ABIE41_RS18740 0.37 -1.7 3,859,001 + ABIE41_RS18740 0.37 +0.6 3,859,002 - ABIE41_RS18740 0.37 +1.7 3,859,002 - ABIE41_RS18740 0.37 +0.9 3,859,002 - ABIE41_RS18740 0.37 +0.2 3,859,002 - ABIE41_RS18740 0.37 +0.2 3,859,002 - ABIE41_RS18740 0.37 -0.5 3,859,002 - ABIE41_RS18740 0.37 +0.4 3,859,002 - ABIE41_RS18740 0.37 +1.0 3,859,002 - ABIE41_RS18740 0.37 -0.5 3,859,002 - ABIE41_RS18740 0.37 -0.4 3,859,044 - ABIE41_RS18740 0.41 +0.1 3,859,061 + ABIE41_RS18740 0.43 +0.1 3,859,148 + ABIE41_RS18740 0.51 -0.6 3,859,148 + ABIE41_RS18740 0.51 -2.2 3,859,149 - ABIE41_RS18740 0.51 -1.4 3,859,149 - ABIE41_RS18740 0.51 -1.1 3,859,149 - ABIE41_RS18740 0.51 -0.0 3,859,149 - ABIE41_RS18740 0.51 -0.7 3,859,152 - ABIE41_RS18740 0.51 +0.5 3,859,196 + ABIE41_RS18740 0.55 -0.3 3,859,196 + ABIE41_RS18740 0.55 -0.3 3,859,196 + ABIE41_RS18740 0.55 -1.8 3,859,197 - ABIE41_RS18740 0.55 +0.2 3,859,197 - ABIE41_RS18740 0.55 -0.4 3,859,197 - ABIE41_RS18740 0.55 -0.1 3,859,197 - ABIE41_RS18740 0.55 -0.4 3,859,197 - ABIE41_RS18740 0.55 -0.3 3,859,469 + ABIE41_RS18740 0.81 -2.1 3,859,469 + ABIE41_RS18740 0.81 +1.9 3,859,469 + ABIE41_RS18740 0.81 +0.0 3,859,469 + ABIE41_RS18740 0.81 -0.3 3,859,470 - ABIE41_RS18740 0.81 +0.8 3,859,470 - ABIE41_RS18740 0.81 -0.3 3,859,470 - ABIE41_RS18740 0.81 +2.6 3,859,623 - +0.6 3,859,623 - -0.4 3,859,969 + ABIE41_RS18745 0.37 -0.4 3,859,969 + ABIE41_RS18745 0.37 -0.3 3,859,969 + ABIE41_RS18745 0.37 -0.2 3,859,969 + ABIE41_RS18745 0.37 +0.6 3,859,970 - ABIE41_RS18745 0.37 -0.7 3,859,970 - ABIE41_RS18745 0.37 +0.4 3,860,017 + ABIE41_RS18745 0.43 +0.4 3,860,017 + ABIE41_RS18745 0.43 +0.6 3,860,125 - ABIE41_RS18745 0.56 -0.2 3,860,162 - ABIE41_RS18745 0.61 +0.9 3,860,162 - ABIE41_RS18745 0.61 +3.9 3,860,308 + ABIE41_RS18745 0.79 -0.5 3,860,308 + ABIE41_RS18745 0.79 +0.9 3,860,308 + ABIE41_RS18745 0.79 -1.2 3,860,309 - ABIE41_RS18745 0.79 +1.2 3,860,309 - ABIE41_RS18745 0.79 +0.4 3,860,309 - ABIE41_RS18745 0.79 +0.8 3,860,309 - ABIE41_RS18745 0.79 +0.1 3,860,373 + ABIE41_RS18745 0.87 +0.4 3,860,374 - ABIE41_RS18745 0.87 +1.0 3,860,374 - ABIE41_RS18745 0.87 +0.2 3,860,374 - ABIE41_RS18745 0.87 -3.3 3,860,440 + +1.4 3,860,441 - +0.9 3,860,441 - -0.7 3,860,441 - +1.6 3,860,441 - -0.5 3,860,543 + +0.8 3,860,543 + -0.2 3,860,543 + +0.4 3,860,543 + +1.1 3,860,544 - +0.1 3,860,544 - -1.9 3,860,544 - -0.0 3,860,747 + ABIE41_RS18750 0.12 -0.7 3,860,748 - ABIE41_RS18750 0.12 -0.7 3,860,748 - ABIE41_RS18750 0.12 +0.9 3,860,850 - ABIE41_RS18750 0.17 -0.8 3,861,080 - ABIE41_RS18750 0.27 +0.1 3,861,308 + ABIE41_RS18750 0.37 -0.3 3,861,309 - ABIE41_RS18750 0.37 +0.4 3,861,309 - ABIE41_RS18750 0.37 +0.7
Or see this region's nucleotide sequence