Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18530

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18520 and ABIE41_RS18525 are separated by 55 nucleotidesABIE41_RS18525 and ABIE41_RS18530 are separated by 48 nucleotidesABIE41_RS18530 and ABIE41_RS18535 are separated by 15 nucleotides ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922 _RS18520 ABIE41_RS18525: ABIE41_RS18525 - GntR family transcriptional regulator, at 3,813,978 to 3,814,643 _RS18525 ABIE41_RS18530: ABIE41_RS18530 - mannonate dehydratase, at 3,814,692 to 3,815,885 _RS18530 ABIE41_RS18535: ABIE41_RS18535 - TRAP transporter large permease, at 3,815,901 to 3,817,178 _RS18535 Position (kb) 3814 3815 3816Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3814.005 kb on - strandat 3814.356 kb on + strand, within ABIE41_RS18525at 3814.356 kb on + strand, within ABIE41_RS18525at 3814.381 kb on - strand, within ABIE41_RS18525at 3815.281 kb on + strand, within ABIE41_RS18530at 3815.281 kb on + strand, within ABIE41_RS18530at 3815.282 kb on - strand, within ABIE41_RS18530at 3815.318 kb on - strand, within ABIE41_RS18530at 3815.326 kb on + strand, within ABIE41_RS18530at 3815.327 kb on - strand, within ABIE41_RS18530at 3815.462 kb on + strand, within ABIE41_RS18530at 3815.463 kb on - strand, within ABIE41_RS18530at 3815.482 kb on + strand, within ABIE41_RS18530at 3815.483 kb on - strand, within ABIE41_RS18530at 3815.483 kb on - strand, within ABIE41_RS18530at 3815.575 kb on + strand, within ABIE41_RS18530at 3815.575 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.627 kb on - strand, within ABIE41_RS18530at 3815.627 kb on - strand, within ABIE41_RS18530at 3816.004 kb on + strandat 3816.004 kb on + strandat 3816.004 kb on + strandat 3816.004 kb on + strandat 3816.004 kb on + strandat 3816.004 kb on + strandat 3816.005 kb on - strandat 3816.005 kb on - strandat 3816.005 kb on - strandat 3816.043 kb on + strand, within ABIE41_RS18535at 3816.043 kb on + strand, within ABIE41_RS18535at 3816.043 kb on + strand, within ABIE41_RS18535at 3816.043 kb on + strand, within ABIE41_RS18535at 3816.043 kb on + strand, within ABIE41_RS18535at 3816.044 kb on - strand, within ABIE41_RS18535at 3816.439 kb on + strand, within ABIE41_RS18535at 3816.440 kb on - strand, within ABIE41_RS18535at 3816.592 kb on + strand, within ABIE41_RS18535at 3816.710 kb on - strand, within ABIE41_RS18535at 3816.779 kb on + strand, within ABIE41_RS18535at 3816.779 kb on + strand, within ABIE41_RS18535at 3816.779 kb on + strand, within ABIE41_RS18535at 3816.779 kb on + strand, within ABIE41_RS18535at 3816.780 kb on - strand, within ABIE41_RS18535at 3816.780 kb on - strand, within ABIE41_RS18535at 3816.780 kb on - strand, within ABIE41_RS18535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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3,813,771 - ABIE41_RS18520 0.89 -0.7
3,813,771 - ABIE41_RS18520 0.89 +0.1
3,813,771 - ABIE41_RS18520 0.89 -1.0
3,814,005 - +0.9
3,814,356 + ABIE41_RS18525 0.57 +1.3
3,814,356 + ABIE41_RS18525 0.57 +0.3
3,814,381 - ABIE41_RS18525 0.61 +0.6
3,815,281 + ABIE41_RS18530 0.49 +1.4
3,815,281 + ABIE41_RS18530 0.49 -0.9
3,815,282 - ABIE41_RS18530 0.49 +0.2
3,815,318 - ABIE41_RS18530 0.52 +0.7
3,815,326 + ABIE41_RS18530 0.53 -0.4
3,815,327 - ABIE41_RS18530 0.53 +2.9
3,815,462 + ABIE41_RS18530 0.64 -0.7
3,815,463 - ABIE41_RS18530 0.65 +0.4
3,815,482 + ABIE41_RS18530 0.66 -1.5
3,815,483 - ABIE41_RS18530 0.66 -0.0
3,815,483 - ABIE41_RS18530 0.66 +1.6
3,815,575 + ABIE41_RS18530 0.74 -0.4
3,815,575 + ABIE41_RS18530 0.74 +0.3
3,815,626 + ABIE41_RS18530 0.78 -0.7
3,815,626 + ABIE41_RS18530 0.78 +1.9
3,815,626 + ABIE41_RS18530 0.78 -1.1
3,815,627 - ABIE41_RS18530 0.78 +0.0
3,815,627 - ABIE41_RS18530 0.78 +0.7
3,816,004 + -0.6
3,816,004 + -0.9
3,816,004 + -0.6
3,816,004 + +0.4
3,816,004 + +1.4
3,816,004 + +0.2
3,816,005 - +0.4
3,816,005 - -2.6
3,816,005 - -0.2
3,816,043 + ABIE41_RS18535 0.11 +0.8
3,816,043 + ABIE41_RS18535 0.11 +0.5
3,816,043 + ABIE41_RS18535 0.11 -0.0
3,816,043 + ABIE41_RS18535 0.11 +0.9
3,816,043 + ABIE41_RS18535 0.11 +0.5
3,816,044 - ABIE41_RS18535 0.11 -1.4
3,816,439 + ABIE41_RS18535 0.42 +0.4
3,816,440 - ABIE41_RS18535 0.42 +1.2
3,816,592 + ABIE41_RS18535 0.54 +2.3
3,816,710 - ABIE41_RS18535 0.63 +1.3
3,816,779 + ABIE41_RS18535 0.69 -0.5
3,816,779 + ABIE41_RS18535 0.69 +1.2
3,816,779 + ABIE41_RS18535 0.69 -0.0
3,816,779 + ABIE41_RS18535 0.69 +0.8
3,816,780 - ABIE41_RS18535 0.69 -0.4
3,816,780 - ABIE41_RS18535 0.69 +0.3
3,816,780 - ABIE41_RS18535 0.69 -1.3

Or see this region's nucleotide sequence