Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15800 and ABIE41_RS15805 are separated by 13 nucleotides ABIE41_RS15805 and ABIE41_RS15810 are separated by 179 nucleotides ABIE41_RS15810 and ABIE41_RS15815 overlap by 23 nucleotides
ABIE41_RS15800: ABIE41_RS15800 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 3,237,749 to 3,239,575
_RS15800
ABIE41_RS15805: ABIE41_RS15805 - YbaN family protein, at 3,239,589 to 3,239,966
_RS15805
ABIE41_RS15810: ABIE41_RS15810 - DUF502 domain-containing protein, at 3,240,146 to 3,240,868
_RS15810
ABIE41_RS15815: ABIE41_RS15815 - ATP-dependent DNA helicase RecG, at 3,240,846 to 3,242,948
_RS15815
Position (kb)
3240
3241 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3239.614 kb on + strand at 3240.227 kb on + strand, within ABIE41_RS15810 at 3240.338 kb on + strand, within ABIE41_RS15810 at 3240.338 kb on + strand, within ABIE41_RS15810 at 3240.362 kb on + strand, within ABIE41_RS15810 at 3240.431 kb on - strand, within ABIE41_RS15810 at 3240.431 kb on - strand, within ABIE41_RS15810 at 3240.503 kb on + strand, within ABIE41_RS15810 at 3240.503 kb on + strand, within ABIE41_RS15810 at 3240.503 kb on + strand, within ABIE41_RS15810 at 3240.503 kb on + strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.504 kb on - strand, within ABIE41_RS15810 at 3240.722 kb on + strand, within ABIE41_RS15810 at 3240.723 kb on - strand, within ABIE41_RS15810 at 3240.723 kb on - strand, within ABIE41_RS15810 at 3240.723 kb on - strand, within ABIE41_RS15810 at 3240.892 kb on + strand at 3240.892 kb on + strand at 3240.892 kb on + strand at 3240.893 kb on - strand at 3240.893 kb on - strand at 3241.163 kb on - strand, within ABIE41_RS15815 at 3241.163 kb on - strand, within ABIE41_RS15815 at 3241.163 kb on - strand, within ABIE41_RS15815 at 3241.429 kb on + strand, within ABIE41_RS15815 at 3241.492 kb on + strand, within ABIE41_RS15815 at 3241.674 kb on - strand, within ABIE41_RS15815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 3,239,614 + -0.6 3,240,227 + ABIE41_RS15810 0.11 +0.4 3,240,338 + ABIE41_RS15810 0.27 +0.1 3,240,338 + ABIE41_RS15810 0.27 +0.0 3,240,362 + ABIE41_RS15810 0.30 +0.1 3,240,431 - ABIE41_RS15810 0.39 +0.1 3,240,431 - ABIE41_RS15810 0.39 +0.5 3,240,503 + ABIE41_RS15810 0.49 -0.2 3,240,503 + ABIE41_RS15810 0.49 +1.3 3,240,503 + ABIE41_RS15810 0.49 +0.9 3,240,503 + ABIE41_RS15810 0.49 -0.0 3,240,504 - ABIE41_RS15810 0.50 +1.7 3,240,504 - ABIE41_RS15810 0.50 +0.6 3,240,504 - ABIE41_RS15810 0.50 +0.2 3,240,504 - ABIE41_RS15810 0.50 +0.9 3,240,504 - ABIE41_RS15810 0.50 -0.2 3,240,504 - ABIE41_RS15810 0.50 +0.7 3,240,722 + ABIE41_RS15810 0.80 -0.2 3,240,723 - ABIE41_RS15810 0.80 +2.4 3,240,723 - ABIE41_RS15810 0.80 -0.1 3,240,723 - ABIE41_RS15810 0.80 -1.2 3,240,892 + +0.3 3,240,892 + -1.8 3,240,892 + +0.6 3,240,893 - -1.8 3,240,893 - +0.3 3,241,163 - ABIE41_RS15815 0.15 -0.8 3,241,163 - ABIE41_RS15815 0.15 +4.7 3,241,163 - ABIE41_RS15815 0.15 -0.4 3,241,429 + ABIE41_RS15815 0.28 -0.9 3,241,492 + ABIE41_RS15815 0.31 -1.0 3,241,674 - ABIE41_RS15815 0.39 -1.5
Or see this region's nucleotide sequence