Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15810

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15800 and ABIE41_RS15805 are separated by 13 nucleotidesABIE41_RS15805 and ABIE41_RS15810 are separated by 179 nucleotidesABIE41_RS15810 and ABIE41_RS15815 overlap by 23 nucleotides ABIE41_RS15800: ABIE41_RS15800 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 3,237,749 to 3,239,575 _RS15800 ABIE41_RS15805: ABIE41_RS15805 - YbaN family protein, at 3,239,589 to 3,239,966 _RS15805 ABIE41_RS15810: ABIE41_RS15810 - DUF502 domain-containing protein, at 3,240,146 to 3,240,868 _RS15810 ABIE41_RS15815: ABIE41_RS15815 - ATP-dependent DNA helicase RecG, at 3,240,846 to 3,242,948 _RS15815 Position (kb) 3240 3241Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3239.614 kb on + strandat 3240.227 kb on + strand, within ABIE41_RS15810at 3240.338 kb on + strand, within ABIE41_RS15810at 3240.338 kb on + strand, within ABIE41_RS15810at 3240.362 kb on + strand, within ABIE41_RS15810at 3240.431 kb on - strand, within ABIE41_RS15810at 3240.431 kb on - strand, within ABIE41_RS15810at 3240.503 kb on + strand, within ABIE41_RS15810at 3240.503 kb on + strand, within ABIE41_RS15810at 3240.503 kb on + strand, within ABIE41_RS15810at 3240.503 kb on + strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.504 kb on - strand, within ABIE41_RS15810at 3240.722 kb on + strand, within ABIE41_RS15810at 3240.723 kb on - strand, within ABIE41_RS15810at 3240.723 kb on - strand, within ABIE41_RS15810at 3240.723 kb on - strand, within ABIE41_RS15810at 3240.892 kb on + strandat 3240.892 kb on + strandat 3240.892 kb on + strandat 3240.893 kb on - strandat 3240.893 kb on - strandat 3241.163 kb on - strand, within ABIE41_RS15815at 3241.163 kb on - strand, within ABIE41_RS15815at 3241.163 kb on - strand, within ABIE41_RS15815at 3241.429 kb on + strand, within ABIE41_RS15815at 3241.492 kb on + strand, within ABIE41_RS15815at 3241.674 kb on - strand, within ABIE41_RS15815

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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3,239,614 + -0.6
3,240,227 + ABIE41_RS15810 0.11 +0.4
3,240,338 + ABIE41_RS15810 0.27 +0.1
3,240,338 + ABIE41_RS15810 0.27 +0.0
3,240,362 + ABIE41_RS15810 0.30 +0.1
3,240,431 - ABIE41_RS15810 0.39 +0.1
3,240,431 - ABIE41_RS15810 0.39 +0.5
3,240,503 + ABIE41_RS15810 0.49 -0.2
3,240,503 + ABIE41_RS15810 0.49 +1.3
3,240,503 + ABIE41_RS15810 0.49 +0.9
3,240,503 + ABIE41_RS15810 0.49 -0.0
3,240,504 - ABIE41_RS15810 0.50 +1.7
3,240,504 - ABIE41_RS15810 0.50 +0.6
3,240,504 - ABIE41_RS15810 0.50 +0.2
3,240,504 - ABIE41_RS15810 0.50 +0.9
3,240,504 - ABIE41_RS15810 0.50 -0.2
3,240,504 - ABIE41_RS15810 0.50 +0.7
3,240,722 + ABIE41_RS15810 0.80 -0.2
3,240,723 - ABIE41_RS15810 0.80 +2.4
3,240,723 - ABIE41_RS15810 0.80 -0.1
3,240,723 - ABIE41_RS15810 0.80 -1.2
3,240,892 + +0.3
3,240,892 + -1.8
3,240,892 + +0.6
3,240,893 - -1.8
3,240,893 - +0.3
3,241,163 - ABIE41_RS15815 0.15 -0.8
3,241,163 - ABIE41_RS15815 0.15 +4.7
3,241,163 - ABIE41_RS15815 0.15 -0.4
3,241,429 + ABIE41_RS15815 0.28 -0.9
3,241,492 + ABIE41_RS15815 0.31 -1.0
3,241,674 - ABIE41_RS15815 0.39 -1.5

Or see this region's nucleotide sequence