Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15750

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS15740 and ABIE41_RS15745 are separated by 183 nucleotidesABIE41_RS15745 and ABIE41_RS15750 are separated by 211 nucleotidesABIE41_RS15750 and ABIE41_RS15755 are separated by 320 nucleotides ABIE41_RS15740: ABIE41_RS15740 - triose-phosphate isomerase, at 3,223,957 to 3,224,719 _RS15740 ABIE41_RS15745: ABIE41_RS15745 - preprotein translocase subunit SecG, at 3,224,903 to 3,225,304 _RS15745 ABIE41_RS15750: ABIE41_RS15750 - CTP synthase, at 3,225,516 to 3,227,144 _RS15750 ABIE41_RS15755: ABIE41_RS15755 - N-acetyl-gamma-glutamyl-phosphate reductase, at 3,227,465 to 3,228,436 _RS15755 Position (kb) 3225 3226 3227 3228Strain fitness (log2 ratio) -3 -2 -1 0 1at 3224.592 kb on - strand, within ABIE41_RS15740at 3224.592 kb on - strand, within ABIE41_RS15740at 3224.784 kb on + strandat 3224.784 kb on + strandat 3224.785 kb on - strandat 3224.785 kb on - strandat 3224.785 kb on - strandat 3227.365 kb on + strandat 3227.775 kb on - strand, within ABIE41_RS15755at 3227.775 kb on - strand, within ABIE41_RS15755at 3227.775 kb on - strand, within ABIE41_RS15755at 3227.775 kb on - strand, within ABIE41_RS15755at 3227.792 kb on + strand, within ABIE41_RS15755at 3227.793 kb on - strand, within ABIE41_RS15755at 3228.040 kb on + strand, within ABIE41_RS15755at 3228.040 kb on + strand, within ABIE41_RS15755at 3228.040 kb on + strand, within ABIE41_RS15755at 3228.041 kb on - strand, within ABIE41_RS15755at 3228.041 kb on - strand, within ABIE41_RS15755at 3228.130 kb on + strand, within ABIE41_RS15755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
remove
3,224,592 - ABIE41_RS15740 0.83 -2.3
3,224,592 - ABIE41_RS15740 0.83 -3.1
3,224,784 + +0.5
3,224,784 + -0.0
3,224,785 - -0.8
3,224,785 - -1.3
3,224,785 - -0.6
3,227,365 + -0.6
3,227,775 - ABIE41_RS15755 0.32 +0.9
3,227,775 - ABIE41_RS15755 0.32 -0.1
3,227,775 - ABIE41_RS15755 0.32 -0.2
3,227,775 - ABIE41_RS15755 0.32 -2.3
3,227,792 + ABIE41_RS15755 0.34 +0.4
3,227,793 - ABIE41_RS15755 0.34 -0.2
3,228,040 + ABIE41_RS15755 0.59 -0.0
3,228,040 + ABIE41_RS15755 0.59 -0.2
3,228,040 + ABIE41_RS15755 0.59 +0.9
3,228,041 - ABIE41_RS15755 0.59 -0.3
3,228,041 - ABIE41_RS15755 0.59 +0.0
3,228,130 + ABIE41_RS15755 0.68 -0.1

Or see this region's nucleotide sequence