Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06080

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06070 and ABIE41_RS06075 are separated by 91 nucleotidesABIE41_RS06075 and ABIE41_RS06080 are separated by 113 nucleotidesABIE41_RS06080 and ABIE41_RS06085 are separated by 112 nucleotides ABIE41_RS06070: ABIE41_RS06070 - calcium:proton antiporter, at 1,253,713 to 1,254,864 _RS06070 ABIE41_RS06075: ABIE41_RS06075 - DUF4287 domain-containing protein, at 1,254,956 to 1,255,168 _RS06075 ABIE41_RS06080: ABIE41_RS06080 - HWE histidine kinase domain-containing protein, at 1,255,282 to 1,256,250 _RS06080 ABIE41_RS06085: ABIE41_RS06085 - 3-dehydroquinate synthase, at 1,256,363 to 1,257,515 _RS06085 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -2 -1 0 1 2at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.736 kb on - strand, within ABIE41_RS06070at 1254.736 kb on - strand, within ABIE41_RS06070at 1254.827 kb on + strandat 1254.828 kb on - strandat 1254.828 kb on - strandat 1254.989 kb on + strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1255.013 kb on + strand, within ABIE41_RS06075at 1255.014 kb on - strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.143 kb on - strand, within ABIE41_RS06075at 1255.343 kb on + strandat 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.968 kb on - strand, within ABIE41_RS06080at 1256.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,254,735 + ABIE41_RS06070 0.89 +0.2
1,254,735 + ABIE41_RS06070 0.89 +0.5
1,254,735 + ABIE41_RS06070 0.89 +0.0
1,254,735 + ABIE41_RS06070 0.89 +0.3
1,254,736 - ABIE41_RS06070 0.89 -1.3
1,254,736 - ABIE41_RS06070 0.89 +0.7
1,254,827 + +0.6
1,254,828 - +1.4
1,254,828 - -0.1
1,254,989 + ABIE41_RS06075 0.15 +0.0
1,254,990 - ABIE41_RS06075 0.16 +2.2
1,254,990 - ABIE41_RS06075 0.16 +0.7
1,254,990 - ABIE41_RS06075 0.16 +0.4
1,254,990 - ABIE41_RS06075 0.16 -0.5
1,255,013 + ABIE41_RS06075 0.27 +0.2
1,255,014 - ABIE41_RS06075 0.27 -0.7
1,255,072 + ABIE41_RS06075 0.54 +0.2
1,255,072 + ABIE41_RS06075 0.54 -0.5
1,255,072 + ABIE41_RS06075 0.54 +0.8
1,255,072 + ABIE41_RS06075 0.54 +1.6
1,255,072 + ABIE41_RS06075 0.54 -1.2
1,255,072 + ABIE41_RS06075 0.54 +0.6
1,255,072 + ABIE41_RS06075 0.54 -2.0
1,255,073 - ABIE41_RS06075 0.55 +0.1
1,255,073 - ABIE41_RS06075 0.55 +1.0
1,255,073 - ABIE41_RS06075 0.55 +0.6
1,255,073 - ABIE41_RS06075 0.55 +0.9
1,255,142 + ABIE41_RS06075 0.87 +0.0
1,255,142 + ABIE41_RS06075 0.87 -0.3
1,255,142 + ABIE41_RS06075 0.87 +0.4
1,255,142 + ABIE41_RS06075 0.87 -1.0
1,255,142 + ABIE41_RS06075 0.87 -2.5
1,255,142 + ABIE41_RS06075 0.87 +0.3
1,255,142 + ABIE41_RS06075 0.87 -1.3
1,255,143 - ABIE41_RS06075 0.88 +0.0
1,255,343 + +0.3
1,255,530 - ABIE41_RS06080 0.26 +0.1
1,255,530 - ABIE41_RS06080 0.26 +0.0
1,255,530 - ABIE41_RS06080 0.26 -0.2
1,255,530 - ABIE41_RS06080 0.26 +0.6
1,255,909 + ABIE41_RS06080 0.65 -0.9
1,255,909 + ABIE41_RS06080 0.65 -1.2
1,255,909 + ABIE41_RS06080 0.65 +0.8
1,255,910 - ABIE41_RS06080 0.65 +0.6
1,255,910 - ABIE41_RS06080 0.65 +1.1
1,255,910 - ABIE41_RS06080 0.65 +0.1
1,255,968 - ABIE41_RS06080 0.71 -0.7
1,256,289 + -0.5

Or see this region's nucleotide sequence