Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03700 and ABIE41_RS03705 overlap by 4 nucleotides ABIE41_RS03705 and ABIE41_RS03710 are separated by 137 nucleotides ABIE41_RS03710 and ABIE41_RS03715 are separated by 148 nucleotides
ABIE41_RS03700: ABIE41_RS03700 - type II and III secretion system protein family protein, at 775,913 to 777,358
_RS03700
ABIE41_RS03705: ABIE41_RS03705 - Flp pilus assembly protein CpaB, at 777,355 to 778,134
_RS03705
ABIE41_RS03710: ABIE41_RS03710 - prepilin peptidase, at 778,272 to 778,784
_RS03710
ABIE41_RS03715: ABIE41_RS03715 - Flp family type IVb pilin, at 778,933 to 779,106
_RS03715
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.446 kb on - strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on + strand, within ABIE41_RS03700 at 776.485 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.486 kb on - strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.487 kb on + strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.488 kb on - strand, within ABIE41_RS03700 at 776.873 kb on + strand, within ABIE41_RS03700 at 776.873 kb on + strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 776.874 kb on - strand, within ABIE41_RS03700 at 777.241 kb on + strand at 777.241 kb on + strand at 777.241 kb on + strand at 777.242 kb on - strand at 777.242 kb on - strand at 777.242 kb on - strand at 777.242 kb on - strand at 777.386 kb on + strand at 777.386 kb on + strand at 777.386 kb on + strand at 777.387 kb on - strand at 777.387 kb on - strand at 777.387 kb on - strand at 777.387 kb on - strand at 777.387 kb on - strand at 777.793 kb on - strand, within ABIE41_RS03705 at 777.951 kb on + strand, within ABIE41_RS03705 at 777.951 kb on + strand, within ABIE41_RS03705 at 777.951 kb on + strand, within ABIE41_RS03705 at 778.201 kb on + strand at 778.201 kb on + strand at 778.201 kb on + strand at 778.202 kb on - strand at 778.202 kb on - strand at 778.217 kb on + strand at 778.218 kb on - strand at 778.348 kb on + strand, within ABIE41_RS03710 at 778.348 kb on + strand, within ABIE41_RS03710 at 778.484 kb on - strand, within ABIE41_RS03710 at 778.484 kb on - strand, within ABIE41_RS03710 at 778.485 kb on - strand, within ABIE41_RS03710 at 778.732 kb on + strand, within ABIE41_RS03710 at 778.732 kb on + strand, within ABIE41_RS03710 at 778.733 kb on - strand at 778.934 kb on + strand at 778.934 kb on + strand at 778.934 kb on + strand at 778.934 kb on + strand at 778.934 kb on + strand at 778.935 kb on - strand at 778.935 kb on - strand at 778.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 776,446 - ABIE41_RS03700 0.37 +1.0 776,485 + ABIE41_RS03700 0.40 +0.7 776,485 + ABIE41_RS03700 0.40 -0.8 776,485 + ABIE41_RS03700 0.40 -0.5 776,485 + ABIE41_RS03700 0.40 +0.2 776,485 + ABIE41_RS03700 0.40 +1.1 776,485 + ABIE41_RS03700 0.40 +1.2 776,485 - ABIE41_RS03700 0.40 +0.4 776,486 - ABIE41_RS03700 0.40 +0.4 776,486 - ABIE41_RS03700 0.40 +0.0 776,486 - ABIE41_RS03700 0.40 +0.7 776,486 - ABIE41_RS03700 0.40 +1.1 776,486 - ABIE41_RS03700 0.40 -1.7 776,487 + ABIE41_RS03700 0.40 -0.3 776,487 + ABIE41_RS03700 0.40 +1.4 776,487 + ABIE41_RS03700 0.40 +0.1 776,487 + ABIE41_RS03700 0.40 -0.4 776,488 - ABIE41_RS03700 0.40 +0.0 776,488 - ABIE41_RS03700 0.40 -0.7 776,488 - ABIE41_RS03700 0.40 +1.0 776,488 - ABIE41_RS03700 0.40 +0.1 776,873 + ABIE41_RS03700 0.66 -0.5 776,873 + ABIE41_RS03700 0.66 +1.3 776,874 - ABIE41_RS03700 0.66 +1.5 776,874 - ABIE41_RS03700 0.66 +0.3 776,874 - ABIE41_RS03700 0.66 +0.5 776,874 - ABIE41_RS03700 0.66 -2.4 777,241 + +0.8 777,241 + +1.6 777,241 + -0.7 777,242 - +0.4 777,242 - -1.0 777,242 - -0.2 777,242 - -1.3 777,386 + +1.5 777,386 + -1.3 777,386 + +2.3 777,387 - -0.5 777,387 - +0.1 777,387 - +0.5 777,387 - -0.8 777,387 - -0.1 777,793 - ABIE41_RS03705 0.56 +1.8 777,951 + ABIE41_RS03705 0.76 -0.2 777,951 + ABIE41_RS03705 0.76 +2.0 777,951 + ABIE41_RS03705 0.76 -1.3 778,201 + -3.3 778,201 + +0.4 778,201 + +2.5 778,202 - -0.7 778,202 - +0.3 778,217 + +0.5 778,218 - -1.0 778,348 + ABIE41_RS03710 0.15 +0.0 778,348 + ABIE41_RS03710 0.15 -0.8 778,484 - ABIE41_RS03710 0.41 +0.5 778,484 - ABIE41_RS03710 0.41 -1.7 778,485 - ABIE41_RS03710 0.42 +0.9 778,732 + ABIE41_RS03710 0.90 -1.6 778,732 + ABIE41_RS03710 0.90 -0.5 778,733 - -1.2 778,934 + -0.3 778,934 + -2.6 778,934 + +0.8 778,934 + -0.3 778,934 + +0.2 778,935 - +0.3 778,935 - -2.2 778,935 - +0.5
Or see this region's nucleotide sequence