Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02645 and ABIE41_RS02650 are separated by 4 nucleotides ABIE41_RS02650 and ABIE41_RS02655 overlap by 4 nucleotides ABIE41_RS02655 and ABIE41_RS02660 are separated by 10 nucleotides
ABIE41_RS02645: ABIE41_RS02645 - ABC transporter substrate-binding protein, at 535,570 to 536,598
_RS02645
ABIE41_RS02650: ABIE41_RS02650 - ABC transporter permease, at 536,603 to 537,355
_RS02650
ABIE41_RS02655: ABIE41_RS02655 - ABC transporter ATP-binding protein, at 537,352 to 538,137
_RS02655
ABIE41_RS02660: ABIE41_RS02660 - DUF4105 domain-containing protein, at 538,148 to 539,155
_RS02660
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 536.504 kb on - strand at 536.795 kb on + strand, within ABIE41_RS02650 at 536.795 kb on + strand, within ABIE41_RS02650 at 536.796 kb on - strand, within ABIE41_RS02650 at 536.796 kb on - strand, within ABIE41_RS02650 at 536.796 kb on - strand, within ABIE41_RS02650 at 537.269 kb on + strand, within ABIE41_RS02650 at 537.269 kb on + strand, within ABIE41_RS02650 at 537.269 kb on + strand, within ABIE41_RS02650 at 537.269 kb on + strand, within ABIE41_RS02650 at 537.269 kb on + strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.270 kb on - strand, within ABIE41_RS02650 at 537.293 kb on + strand at 537.965 kb on - strand, within ABIE41_RS02655 at 537.965 kb on - strand, within ABIE41_RS02655 at 537.965 kb on - strand, within ABIE41_RS02655 at 538.289 kb on - strand, within ABIE41_RS02660 at 538.299 kb on + strand, within ABIE41_RS02660 at 538.299 kb on + strand, within ABIE41_RS02660 at 538.299 kb on + strand, within ABIE41_RS02660 at 538.386 kb on + strand, within ABIE41_RS02660 at 538.386 kb on + strand, within ABIE41_RS02660 at 538.386 kb on + strand, within ABIE41_RS02660 at 538.387 kb on - strand, within ABIE41_RS02660 at 538.422 kb on + strand, within ABIE41_RS02660 at 538.422 kb on + strand, within ABIE41_RS02660 at 538.423 kb on - strand, within ABIE41_RS02660 at 538.423 kb on - strand, within ABIE41_RS02660 at 538.423 kb on - strand, within ABIE41_RS02660 at 538.464 kb on + strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.465 kb on - strand, within ABIE41_RS02660 at 538.581 kb on + strand, within ABIE41_RS02660 at 538.582 kb on - strand, within ABIE41_RS02660 at 538.582 kb on - strand, within ABIE41_RS02660 at 538.582 kb on - strand, within ABIE41_RS02660 at 538.582 kb on - strand, within ABIE41_RS02660 at 538.594 kb on - strand, within ABIE41_RS02660 at 538.728 kb on + strand, within ABIE41_RS02660 at 538.729 kb on - strand, within ABIE41_RS02660 at 538.737 kb on + strand, within ABIE41_RS02660 at 538.737 kb on + strand, within ABIE41_RS02660 at 538.737 kb on + strand, within ABIE41_RS02660 at 538.737 kb on + strand, within ABIE41_RS02660 at 538.737 kb on + strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 538.738 kb on - strand, within ABIE41_RS02660 at 539.128 kb on + strand at 539.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 536,504 - +2.9 536,795 + ABIE41_RS02650 0.25 +2.0 536,795 + ABIE41_RS02650 0.25 +0.7 536,796 - ABIE41_RS02650 0.26 -3.3 536,796 - ABIE41_RS02650 0.26 +1.3 536,796 - ABIE41_RS02650 0.26 +0.3 537,269 + ABIE41_RS02650 0.88 +0.9 537,269 + ABIE41_RS02650 0.88 +0.4 537,269 + ABIE41_RS02650 0.88 -0.1 537,269 + ABIE41_RS02650 0.88 -0.1 537,269 + ABIE41_RS02650 0.88 -2.0 537,270 - ABIE41_RS02650 0.89 +0.2 537,270 - ABIE41_RS02650 0.89 +0.8 537,270 - ABIE41_RS02650 0.89 -0.3 537,270 - ABIE41_RS02650 0.89 -1.1 537,270 - ABIE41_RS02650 0.89 -1.6 537,270 - ABIE41_RS02650 0.89 +0.3 537,270 - ABIE41_RS02650 0.89 -0.3 537,270 - ABIE41_RS02650 0.89 -2.2 537,293 + +0.5 537,965 - ABIE41_RS02655 0.78 -1.6 537,965 - ABIE41_RS02655 0.78 -0.2 537,965 - ABIE41_RS02655 0.78 +2.0 538,289 - ABIE41_RS02660 0.14 -2.7 538,299 + ABIE41_RS02660 0.15 +0.3 538,299 + ABIE41_RS02660 0.15 -0.8 538,299 + ABIE41_RS02660 0.15 +0.1 538,386 + ABIE41_RS02660 0.24 +0.4 538,386 + ABIE41_RS02660 0.24 -0.6 538,386 + ABIE41_RS02660 0.24 +1.2 538,387 - ABIE41_RS02660 0.24 -1.8 538,422 + ABIE41_RS02660 0.27 +1.9 538,422 + ABIE41_RS02660 0.27 +0.2 538,423 - ABIE41_RS02660 0.27 -0.3 538,423 - ABIE41_RS02660 0.27 +1.6 538,423 - ABIE41_RS02660 0.27 +0.3 538,464 + ABIE41_RS02660 0.31 -0.3 538,465 - ABIE41_RS02660 0.31 -0.5 538,465 - ABIE41_RS02660 0.31 -2.4 538,465 - ABIE41_RS02660 0.31 +0.1 538,465 - ABIE41_RS02660 0.31 +0.4 538,465 - ABIE41_RS02660 0.31 -1.6 538,465 - ABIE41_RS02660 0.31 -0.8 538,581 + ABIE41_RS02660 0.43 -1.0 538,582 - ABIE41_RS02660 0.43 -0.3 538,582 - ABIE41_RS02660 0.43 -0.1 538,582 - ABIE41_RS02660 0.43 +0.0 538,582 - ABIE41_RS02660 0.43 +0.9 538,594 - ABIE41_RS02660 0.44 -1.2 538,728 + ABIE41_RS02660 0.58 +0.9 538,729 - ABIE41_RS02660 0.58 -0.1 538,737 + ABIE41_RS02660 0.58 -1.1 538,737 + ABIE41_RS02660 0.58 -0.4 538,737 + ABIE41_RS02660 0.58 -0.8 538,737 + ABIE41_RS02660 0.58 -0.5 538,737 + ABIE41_RS02660 0.58 -1.0 538,738 - ABIE41_RS02660 0.59 +0.2 538,738 - ABIE41_RS02660 0.59 +0.9 538,738 - ABIE41_RS02660 0.59 -1.3 538,738 - ABIE41_RS02660 0.59 -0.3 538,738 - ABIE41_RS02660 0.59 +0.0 538,738 - ABIE41_RS02660 0.59 -1.7 538,738 - ABIE41_RS02660 0.59 +0.5 539,128 + -2.3 539,129 - -0.0
Or see this region's nucleotide sequence