Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00588 and PFR28_00589 overlap by 4 nucleotides PFR28_00589 and PFR28_00590 are separated by 116 nucleotides PFR28_00590 and PFR28_00591 are separated by 102 nucleotides PFR28_00591 and PFR28_00592 are separated by 75 nucleotides
PFR28_00588: PFR28_00588 - hypothetical protein, at 629,802 to 630,752
_00588
PFR28_00589: PFR28_00589 - Peptide deformylase, at 630,749 to 631,288
_00589
PFR28_00590: PFR28_00590 - hypothetical protein, at 631,405 to 631,827
_00590
PFR28_00591: PFR28_00591 - hypothetical protein, at 631,930 to 632,040
_00591
PFR28_00592: PFR28_00592 - hypothetical protein, at 632,116 to 632,667
_00592
Position (kb) 630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 629.827 kb on + strand at 629.853 kb on - strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.889 kb on + strand at 629.890 kb on - strand at 629.890 kb on - strand at 629.890 kb on - strand at 630.099 kb on - strand, within PFR28_00588 at 630.396 kb on + strand, within PFR28_00588 at 630.396 kb on + strand, within PFR28_00588 at 630.396 kb on + strand, within PFR28_00588 at 630.397 kb on - strand, within PFR28_00588 at 630.397 kb on - strand, within PFR28_00588 at 630.397 kb on - strand, within PFR28_00588 at 630.397 kb on - strand, within PFR28_00588 at 630.397 kb on - strand, within PFR28_00588 at 630.399 kb on + strand, within PFR28_00588 at 630.399 kb on + strand, within PFR28_00588 at 630.399 kb on + strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.400 kb on - strand, within PFR28_00588 at 630.403 kb on + strand, within PFR28_00588 at 630.403 kb on + strand, within PFR28_00588 at 630.403 kb on + strand, within PFR28_00588 at 630.403 kb on + strand, within PFR28_00588 at 630.404 kb on - strand, within PFR28_00588 at 630.404 kb on - strand, within PFR28_00588 at 630.498 kb on + strand, within PFR28_00588 at 630.519 kb on + strand, within PFR28_00588 at 630.519 kb on + strand, within PFR28_00588 at 630.519 kb on + strand, within PFR28_00588 at 630.520 kb on - strand, within PFR28_00588 at 630.520 kb on - strand, within PFR28_00588 at 630.531 kb on + strand, within PFR28_00588 at 630.531 kb on + strand, within PFR28_00588 at 630.531 kb on + strand, within PFR28_00588 at 630.531 kb on + strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.532 kb on - strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.567 kb on + strand, within PFR28_00588 at 630.568 kb on - strand, within PFR28_00588 at 630.568 kb on - strand, within PFR28_00588 at 630.568 kb on - strand, within PFR28_00588 at 630.568 kb on - strand, within PFR28_00588 at 630.568 kb on - strand, within PFR28_00588 at 630.573 kb on + strand, within PFR28_00588 at 630.573 kb on + strand, within PFR28_00588 at 630.573 kb on + strand, within PFR28_00588 at 630.574 kb on - strand, within PFR28_00588 at 630.574 kb on - strand, within PFR28_00588 at 630.574 kb on - strand, within PFR28_00588 at 630.575 kb on + strand, within PFR28_00588 at 630.575 kb on + strand, within PFR28_00588 at 630.575 kb on + strand, within PFR28_00588 at 630.576 kb on - strand, within PFR28_00588 at 630.576 kb on - strand, within PFR28_00588 at 630.576 kb on - strand, within PFR28_00588 at 631.089 kb on - strand, within PFR28_00589 at 631.104 kb on - strand, within PFR28_00589 at 631.206 kb on - strand, within PFR28_00589 at 631.487 kb on + strand, within PFR28_00590 at 631.526 kb on + strand, within PFR28_00590 at 631.626 kb on - strand, within PFR28_00590 at 631.766 kb on + strand, within PFR28_00590 at 631.767 kb on - strand, within PFR28_00590 at 631.812 kb on - strand at 631.860 kb on + strand at 631.861 kb on - strand at 631.862 kb on + strand at 631.862 kb on + strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.884 kb on + strand at 631.884 kb on + strand at 631.885 kb on - strand at 631.885 kb on - strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 632.137 kb on - strand at 632.137 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 629,827 + +0.1 629,853 - +0.7 629,889 + +1.5 629,889 + -0.9 629,889 + -1.3 629,890 - -0.3 629,890 - +1.7 629,890 - +2.2 630,099 - PFR28_00588 0.31 -1.7 630,396 + PFR28_00588 0.62 +1.7 630,396 + PFR28_00588 0.62 +3.7 630,396 + PFR28_00588 0.62 +1.7 630,397 - PFR28_00588 0.63 +2.2 630,397 - PFR28_00588 0.63 +0.7 630,397 - PFR28_00588 0.63 +1.6 630,397 - PFR28_00588 0.63 +0.7 630,397 - PFR28_00588 0.63 +0.1 630,399 + PFR28_00588 0.63 +0.7 630,399 + PFR28_00588 0.63 -0.3 630,399 + PFR28_00588 0.63 +2.2 630,400 - PFR28_00588 0.63 +1.7 630,400 - PFR28_00588 0.63 +1.7 630,400 - PFR28_00588 0.63 +3.1 630,400 - PFR28_00588 0.63 -0.3 630,400 - PFR28_00588 0.63 +0.1 630,400 - PFR28_00588 0.63 +1.7 630,403 + PFR28_00588 0.63 +0.7 630,403 + PFR28_00588 0.63 +0.7 630,403 + PFR28_00588 0.63 +1.7 630,403 + PFR28_00588 0.63 +0.1 630,404 - PFR28_00588 0.63 +0.1 630,404 - PFR28_00588 0.63 +0.7 630,498 + PFR28_00588 0.73 +1.1 630,519 + PFR28_00588 0.75 +1.7 630,519 + PFR28_00588 0.75 -0.7 630,519 + PFR28_00588 0.75 +0.7 630,520 - PFR28_00588 0.75 -0.7 630,520 - PFR28_00588 0.75 +0.1 630,531 + PFR28_00588 0.77 +0.1 630,531 + PFR28_00588 0.77 -0.3 630,531 + PFR28_00588 0.77 -0.3 630,531 + PFR28_00588 0.77 +1.7 630,532 - PFR28_00588 0.77 +0.1 630,532 - PFR28_00588 0.77 +1.7 630,532 - PFR28_00588 0.77 +0.7 630,532 - PFR28_00588 0.77 +1.7 630,532 - PFR28_00588 0.77 +2.4 630,532 - PFR28_00588 0.77 +0.1 630,532 - PFR28_00588 0.77 +3.2 630,532 - PFR28_00588 0.77 +0.1 630,532 - PFR28_00588 0.77 -1.3 630,532 - PFR28_00588 0.77 +0.7 630,532 - PFR28_00588 0.77 +0.5 630,532 - PFR28_00588 0.77 +0.7 630,532 - PFR28_00588 0.77 +0.7 630,532 - PFR28_00588 0.77 +3.5 630,567 + PFR28_00588 0.80 +2.2 630,567 + PFR28_00588 0.80 -1.1 630,567 + PFR28_00588 0.80 -0.3 630,567 + PFR28_00588 0.80 +0.7 630,567 + PFR28_00588 0.80 -1.3 630,567 + PFR28_00588 0.80 +0.1 630,567 + PFR28_00588 0.80 +0.1 630,568 - PFR28_00588 0.81 +0.7 630,568 - PFR28_00588 0.81 -1.1 630,568 - PFR28_00588 0.81 -0.9 630,568 - PFR28_00588 0.81 +0.7 630,568 - PFR28_00588 0.81 +1.7 630,573 + PFR28_00588 0.81 +3.7 630,573 + PFR28_00588 0.81 -0.9 630,573 + PFR28_00588 0.81 -1.8 630,574 - PFR28_00588 0.81 +0.7 630,574 - PFR28_00588 0.81 +2.7 630,574 - PFR28_00588 0.81 -1.3 630,575 + PFR28_00588 0.81 +0.7 630,575 + PFR28_00588 0.81 +0.7 630,575 + PFR28_00588 0.81 +0.7 630,576 - PFR28_00588 0.81 +1.7 630,576 - PFR28_00588 0.81 +1.7 630,576 - PFR28_00588 0.81 +1.3 631,089 - PFR28_00589 0.63 +3.5 631,104 - PFR28_00589 0.66 +1.1 631,206 - PFR28_00589 0.85 -1.3 631,487 + PFR28_00590 0.19 -3.5 631,526 + PFR28_00590 0.29 -1.9 631,626 - PFR28_00590 0.52 +2.7 631,766 + PFR28_00590 0.85 -0.4 631,767 - PFR28_00590 0.86 -3.0 631,812 - -0.0 631,860 + +0.9 631,861 - +0.4 631,862 + -0.6 631,862 + -1.1 631,863 - -0.1 631,863 - -1.8 631,863 - -1.1 631,884 + +1.0 631,884 + +0.0 631,885 - +0.7 631,885 - -0.1 631,890 + +1.3 631,890 + +0.5 631,890 + -1.1 631,890 + -0.7 631,890 + +0.5 631,890 + +1.7 631,890 + +1.0 631,890 + -1.1 631,890 + +0.1 631,890 + -1.8 631,890 + +0.7 631,890 + -2.4 631,890 + +0.1 631,890 + +0.9 631,890 + -0.3 631,890 + +0.1 631,890 + -2.7 631,890 + +0.7 631,890 + -1.0 631,890 + -0.6 631,890 + +0.1 631,890 + +0.0 631,890 + -0.2 631,890 + +0.6 631,890 + +1.2 631,890 + +0.6 631,890 + -0.2 631,890 + -1.3 631,890 + +0.7 631,890 + -0.4 631,891 - +2.2 631,891 - +2.5 631,891 - +1.0 631,891 - +1.4 631,891 - +0.9 631,891 - -2.1 631,891 - -0.9 631,891 - -0.6 631,891 - -1.1 631,891 - +2.1 631,891 - -3.7 631,891 - +0.0 631,891 - -2.7 631,891 - +0.4 631,891 - -1.3 631,891 - -0.2 631,891 - +0.7 631,891 - +0.9 631,891 - -1.5 631,891 - -0.4 631,892 + +0.5 631,892 + +0.2 631,892 + +0.4 631,892 + -0.7 631,892 + +2.3 631,892 + -3.3 631,892 + -3.4 631,893 - -2.8 631,893 - +1.2 631,893 - -0.9 631,893 - -2.6 631,893 - +0.9 631,893 - +0.7 631,893 - +1.7 631,893 - +1.4 631,922 + -0.7 631,922 + +0.2 631,922 + +0.2 631,922 + +0.5 631,922 + -2.0 631,922 + +0.6 631,922 + -4.6 631,922 + +0.4 631,922 + -2.4 631,923 - +2.4 631,923 - +2.1 631,923 - -0.7 631,923 - -0.0 631,923 - -1.0 631,923 - -1.0 631,926 + -1.3 631,926 + -0.7 631,926 + -1.3 631,926 + -0.8 631,926 + +0.1 631,926 + +1.2 631,926 + +0.7 631,926 + -2.0 631,926 + -0.2 631,926 + +1.7 631,926 + -1.1 631,926 + +0.3 631,926 + -0.2 631,926 + -0.7 631,926 + +0.4 631,926 + +0.7 631,927 - -0.9 631,927 - -1.7 631,927 - -1.5 631,927 - -1.1 631,927 - -1.0 631,927 - +0.7 631,927 - +1.0 631,927 - -0.1 631,927 - +0.1 631,927 - +0.6 631,927 - -0.3 631,927 - -0.2 632,137 - +1.9 632,137 - +1.1
Or see this region's nucleotide sequence