Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21250 and ABIE41_RS21255 overlap by 4 nucleotides ABIE41_RS21255 and ABIE41_RS21260 are separated by 24 nucleotides ABIE41_RS21260 and ABIE41_RS21265 are separated by 325 nucleotides
ABIE41_RS21250: ABIE41_RS21250 - adenosylcobinamide-GDP ribazoletransferase, at 4,366,850 to 4,367,743
_RS21250
ABIE41_RS21255: ABIE41_RS21255 - DUF1289 domain-containing protein, at 4,367,740 to 4,367,913
_RS21255
ABIE41_RS21260: ABIE41_RS21260 - sulfite exporter TauE/SafE family protein, at 4,367,938 to 4,368,771
_RS21260
ABIE41_RS21265: ABIE41_RS21265 - SMP-30/gluconolactonase/LRE family protein, at 4,369,097 to 4,370,338
_RS21265
Position (kb) 4367
4368
4369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4368.102 kb on - strand, within ABIE41_RS21260 at 4368.102 kb on - strand, within ABIE41_RS21260 at 4368.149 kb on + strand, within ABIE41_RS21260 at 4368.150 kb on - strand, within ABIE41_RS21260 at 4368.233 kb on + strand, within ABIE41_RS21260 at 4368.233 kb on + strand, within ABIE41_RS21260 at 4368.233 kb on + strand, within ABIE41_RS21260 at 4368.234 kb on - strand, within ABIE41_RS21260 at 4368.234 kb on - strand, within ABIE41_RS21260 at 4368.234 kb on - strand, within ABIE41_RS21260 at 4368.311 kb on + strand, within ABIE41_RS21260 at 4368.311 kb on + strand, within ABIE41_RS21260 at 4368.311 kb on + strand, within ABIE41_RS21260 at 4368.311 kb on + strand, within ABIE41_RS21260 at 4368.311 kb on + strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.312 kb on - strand, within ABIE41_RS21260 at 4368.452 kb on + strand, within ABIE41_RS21260 at 4368.453 kb on - strand, within ABIE41_RS21260 at 4368.540 kb on + strand, within ABIE41_RS21260 at 4368.641 kb on + strand, within ABIE41_RS21260 at 4368.657 kb on + strand, within ABIE41_RS21260 at 4368.848 kb on - strand at 4369.091 kb on - strand at 4369.091 kb on - strand at 4369.091 kb on - strand at 4369.108 kb on + strand at 4369.109 kb on - strand at 4369.307 kb on + strand, within ABIE41_RS21265 at 4369.307 kb on + strand, within ABIE41_RS21265 at 4369.307 kb on + strand, within ABIE41_RS21265 at 4369.307 kb on + strand, within ABIE41_RS21265 at 4369.307 kb on + strand, within ABIE41_RS21265 at 4369.308 kb on - strand, within ABIE41_RS21265 at 4369.308 kb on - strand, within ABIE41_RS21265 at 4369.308 kb on - strand, within ABIE41_RS21265 at 4369.439 kb on + strand, within ABIE41_RS21265 at 4369.439 kb on + strand, within ABIE41_RS21265 at 4369.605 kb on - strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.700 kb on + strand, within ABIE41_RS21265 at 4369.701 kb on - strand, within ABIE41_RS21265 at 4369.736 kb on + strand, within ABIE41_RS21265
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 4,368,102 - ABIE41_RS21260 0.20 -0.2 4,368,102 - ABIE41_RS21260 0.20 +0.3 4,368,149 + ABIE41_RS21260 0.25 -0.1 4,368,150 - ABIE41_RS21260 0.25 +0.2 4,368,233 + ABIE41_RS21260 0.35 +0.1 4,368,233 + ABIE41_RS21260 0.35 -2.0 4,368,233 + ABIE41_RS21260 0.35 +0.2 4,368,234 - ABIE41_RS21260 0.35 +0.6 4,368,234 - ABIE41_RS21260 0.35 +0.1 4,368,234 - ABIE41_RS21260 0.35 +0.0 4,368,311 + ABIE41_RS21260 0.45 +0.4 4,368,311 + ABIE41_RS21260 0.45 +0.1 4,368,311 + ABIE41_RS21260 0.45 -0.8 4,368,311 + ABIE41_RS21260 0.45 +0.6 4,368,311 + ABIE41_RS21260 0.45 -0.1 4,368,312 - ABIE41_RS21260 0.45 +0.8 4,368,312 - ABIE41_RS21260 0.45 +1.4 4,368,312 - ABIE41_RS21260 0.45 -0.3 4,368,312 - ABIE41_RS21260 0.45 +0.4 4,368,312 - ABIE41_RS21260 0.45 +0.3 4,368,312 - ABIE41_RS21260 0.45 -0.5 4,368,312 - ABIE41_RS21260 0.45 +0.1 4,368,452 + ABIE41_RS21260 0.62 +0.8 4,368,453 - ABIE41_RS21260 0.62 +2.2 4,368,540 + ABIE41_RS21260 0.72 -1.7 4,368,641 + ABIE41_RS21260 0.84 +0.6 4,368,657 + ABIE41_RS21260 0.86 -0.5 4,368,848 - -2.4 4,369,091 - +0.2 4,369,091 - -0.3 4,369,091 - -0.1 4,369,108 + -0.4 4,369,109 - +0.2 4,369,307 + ABIE41_RS21265 0.17 -1.5 4,369,307 + ABIE41_RS21265 0.17 -3.6 4,369,307 + ABIE41_RS21265 0.17 +1.2 4,369,307 + ABIE41_RS21265 0.17 -0.6 4,369,307 + ABIE41_RS21265 0.17 +0.4 4,369,308 - ABIE41_RS21265 0.17 -1.6 4,369,308 - ABIE41_RS21265 0.17 -1.0 4,369,308 - ABIE41_RS21265 0.17 -1.4 4,369,439 + ABIE41_RS21265 0.28 +0.1 4,369,439 + ABIE41_RS21265 0.28 -0.0 4,369,605 - ABIE41_RS21265 0.41 +1.9 4,369,700 + ABIE41_RS21265 0.49 -1.4 4,369,700 + ABIE41_RS21265 0.49 +0.1 4,369,700 + ABIE41_RS21265 0.49 -0.3 4,369,701 - ABIE41_RS21265 0.49 -1.6 4,369,736 + ABIE41_RS21265 0.51 -0.6
Or see this region's nucleotide sequence