Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19725 and ABIE41_RS19730 are separated by 4 nucleotides ABIE41_RS19730 and ABIE41_RS19735 are separated by 36 nucleotides ABIE41_RS19735 and ABIE41_RS19740 are separated by 38 nucleotides
ABIE41_RS19725: ABIE41_RS19725 - polysaccharide deacetylase family protein, at 4,051,072 to 4,051,965
_RS19725
ABIE41_RS19730: ABIE41_RS19730 - (S)-ureidoglycine aminohydrolase, at 4,051,970 to 4,052,770
_RS19730
ABIE41_RS19735: ABIE41_RS19735 - MFS transporter, at 4,052,807 to 4,054,012
_RS19735
ABIE41_RS19740: ABIE41_RS19740 - thiamine-phosphate kinase, at 4,054,051 to 4,055,037
_RS19740
Position (kb)
4052
4053
4054
4055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4052.001 kb on + strand at 4052.001 kb on + strand at 4052.001 kb on + strand at 4052.002 kb on - strand at 4052.010 kb on + strand at 4052.010 kb on + strand at 4052.010 kb on + strand at 4052.010 kb on + strand at 4052.011 kb on - strand at 4052.055 kb on + strand, within ABIE41_RS19730 at 4052.116 kb on - strand, within ABIE41_RS19730 at 4052.116 kb on - strand, within ABIE41_RS19730 at 4052.116 kb on - strand, within ABIE41_RS19730 at 4052.139 kb on + strand, within ABIE41_RS19730 at 4052.139 kb on + strand, within ABIE41_RS19730 at 4052.352 kb on + strand, within ABIE41_RS19730 at 4052.480 kb on + strand, within ABIE41_RS19730 at 4052.505 kb on + strand, within ABIE41_RS19730 at 4052.506 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.578 kb on - strand, within ABIE41_RS19730 at 4052.686 kb on - strand, within ABIE41_RS19730 at 4052.782 kb on + strand at 4052.782 kb on + strand at 4052.782 kb on + strand at 4052.783 kb on - strand at 4053.010 kb on - strand, within ABIE41_RS19735 at 4053.321 kb on + strand, within ABIE41_RS19735 at 4053.321 kb on + strand, within ABIE41_RS19735 at 4053.322 kb on - strand, within ABIE41_RS19735 at 4053.322 kb on - strand, within ABIE41_RS19735 at 4053.633 kb on + strand, within ABIE41_RS19735 at 4053.634 kb on - strand, within ABIE41_RS19735 at 4053.762 kb on + strand, within ABIE41_RS19735
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 4,052,001 + -1.5 4,052,001 + +1.4 4,052,001 + -0.2 4,052,002 - -0.1 4,052,010 + +0.0 4,052,010 + +0.7 4,052,010 + -0.3 4,052,010 + -0.8 4,052,011 - +0.2 4,052,055 + ABIE41_RS19730 0.11 +1.0 4,052,116 - ABIE41_RS19730 0.18 -1.5 4,052,116 - ABIE41_RS19730 0.18 -0.7 4,052,116 - ABIE41_RS19730 0.18 +1.4 4,052,139 + ABIE41_RS19730 0.21 +0.7 4,052,139 + ABIE41_RS19730 0.21 -0.3 4,052,352 + ABIE41_RS19730 0.48 +0.7 4,052,480 + ABIE41_RS19730 0.64 -1.2 4,052,505 + ABIE41_RS19730 0.67 -0.6 4,052,506 - ABIE41_RS19730 0.67 -0.6 4,052,578 - ABIE41_RS19730 0.76 +1.5 4,052,578 - ABIE41_RS19730 0.76 -1.3 4,052,578 - ABIE41_RS19730 0.76 -0.2 4,052,578 - ABIE41_RS19730 0.76 -1.4 4,052,578 - ABIE41_RS19730 0.76 -0.5 4,052,578 - ABIE41_RS19730 0.76 +0.6 4,052,578 - ABIE41_RS19730 0.76 -1.8 4,052,578 - ABIE41_RS19730 0.76 +0.2 4,052,686 - ABIE41_RS19730 0.89 +0.2 4,052,782 + +0.1 4,052,782 + -0.7 4,052,782 + +0.1 4,052,783 - +0.1 4,053,010 - ABIE41_RS19735 0.17 +0.3 4,053,321 + ABIE41_RS19735 0.43 +2.4 4,053,321 + ABIE41_RS19735 0.43 +0.3 4,053,322 - ABIE41_RS19735 0.43 -0.2 4,053,322 - ABIE41_RS19735 0.43 +0.3 4,053,633 + ABIE41_RS19735 0.68 +0.8 4,053,634 - ABIE41_RS19735 0.69 +0.5 4,053,762 + ABIE41_RS19735 0.79 -0.9
Or see this region's nucleotide sequence