Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18520 and ABIE41_RS18525 are separated by 55 nucleotides ABIE41_RS18525 and ABIE41_RS18530 are separated by 48 nucleotides ABIE41_RS18530 and ABIE41_RS18535 are separated by 15 nucleotides
ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922
_RS18520
ABIE41_RS18525: ABIE41_RS18525 - GntR family transcriptional regulator, at 3,813,978 to 3,814,643
_RS18525
ABIE41_RS18530: ABIE41_RS18530 - mannonate dehydratase, at 3,814,692 to 3,815,885
_RS18530
ABIE41_RS18535: ABIE41_RS18535 - TRAP transporter large permease, at 3,815,901 to 3,817,178
_RS18535
Position (kb)
3814
3815
3816 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3813.771 kb on - strand, within ABIE41_RS18520 at 3814.005 kb on - strand at 3814.356 kb on + strand, within ABIE41_RS18525 at 3814.356 kb on + strand, within ABIE41_RS18525 at 3814.381 kb on - strand, within ABIE41_RS18525 at 3815.281 kb on + strand, within ABIE41_RS18530 at 3815.281 kb on + strand, within ABIE41_RS18530 at 3815.282 kb on - strand, within ABIE41_RS18530 at 3815.318 kb on - strand, within ABIE41_RS18530 at 3815.326 kb on + strand, within ABIE41_RS18530 at 3815.327 kb on - strand, within ABIE41_RS18530 at 3815.462 kb on + strand, within ABIE41_RS18530 at 3815.463 kb on - strand, within ABIE41_RS18530 at 3815.482 kb on + strand, within ABIE41_RS18530 at 3815.483 kb on - strand, within ABIE41_RS18530 at 3815.483 kb on - strand, within ABIE41_RS18530 at 3815.575 kb on + strand, within ABIE41_RS18530 at 3815.575 kb on + strand, within ABIE41_RS18530 at 3815.626 kb on + strand, within ABIE41_RS18530 at 3815.626 kb on + strand, within ABIE41_RS18530 at 3815.626 kb on + strand, within ABIE41_RS18530 at 3815.627 kb on - strand, within ABIE41_RS18530 at 3815.627 kb on - strand, within ABIE41_RS18530 at 3816.004 kb on + strand at 3816.004 kb on + strand at 3816.004 kb on + strand at 3816.004 kb on + strand at 3816.004 kb on + strand at 3816.004 kb on + strand at 3816.005 kb on - strand at 3816.005 kb on - strand at 3816.005 kb on - strand at 3816.043 kb on + strand, within ABIE41_RS18535 at 3816.043 kb on + strand, within ABIE41_RS18535 at 3816.043 kb on + strand, within ABIE41_RS18535 at 3816.043 kb on + strand, within ABIE41_RS18535 at 3816.043 kb on + strand, within ABIE41_RS18535 at 3816.044 kb on - strand, within ABIE41_RS18535 at 3816.439 kb on + strand, within ABIE41_RS18535 at 3816.440 kb on - strand, within ABIE41_RS18535 at 3816.592 kb on + strand, within ABIE41_RS18535 at 3816.710 kb on - strand, within ABIE41_RS18535 at 3816.779 kb on + strand, within ABIE41_RS18535 at 3816.779 kb on + strand, within ABIE41_RS18535 at 3816.779 kb on + strand, within ABIE41_RS18535 at 3816.779 kb on + strand, within ABIE41_RS18535 at 3816.780 kb on - strand, within ABIE41_RS18535 at 3816.780 kb on - strand, within ABIE41_RS18535 at 3816.780 kb on - strand, within ABIE41_RS18535
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 3,813,771 - ABIE41_RS18520 0.89 -0.6 3,813,771 - ABIE41_RS18520 0.89 +0.2 3,813,771 - ABIE41_RS18520 0.89 -0.1 3,814,005 - +2.0 3,814,356 + ABIE41_RS18525 0.57 +0.8 3,814,356 + ABIE41_RS18525 0.57 +0.3 3,814,381 - ABIE41_RS18525 0.61 +1.3 3,815,281 + ABIE41_RS18530 0.49 +0.8 3,815,281 + ABIE41_RS18530 0.49 +0.4 3,815,282 - ABIE41_RS18530 0.49 +0.1 3,815,318 - ABIE41_RS18530 0.52 -0.2 3,815,326 + ABIE41_RS18530 0.53 +0.4 3,815,327 - ABIE41_RS18530 0.53 +2.0 3,815,462 + ABIE41_RS18530 0.64 +0.4 3,815,463 - ABIE41_RS18530 0.65 -1.4 3,815,482 + ABIE41_RS18530 0.66 +0.3 3,815,483 - ABIE41_RS18530 0.66 +0.9 3,815,483 - ABIE41_RS18530 0.66 +2.0 3,815,575 + ABIE41_RS18530 0.74 -0.3 3,815,575 + ABIE41_RS18530 0.74 -0.4 3,815,626 + ABIE41_RS18530 0.78 +0.1 3,815,626 + ABIE41_RS18530 0.78 +0.7 3,815,626 + ABIE41_RS18530 0.78 -1.0 3,815,627 - ABIE41_RS18530 0.78 -0.2 3,815,627 - ABIE41_RS18530 0.78 +1.1 3,816,004 + +0.6 3,816,004 + -1.4 3,816,004 + -0.1 3,816,004 + +0.4 3,816,004 + +0.3 3,816,004 + -0.9 3,816,005 - -0.6 3,816,005 - -0.9 3,816,005 - -0.5 3,816,043 + ABIE41_RS18535 0.11 +0.4 3,816,043 + ABIE41_RS18535 0.11 -0.8 3,816,043 + ABIE41_RS18535 0.11 -0.4 3,816,043 + ABIE41_RS18535 0.11 -0.6 3,816,043 + ABIE41_RS18535 0.11 -0.3 3,816,044 - ABIE41_RS18535 0.11 +0.7 3,816,439 + ABIE41_RS18535 0.42 +0.2 3,816,440 - ABIE41_RS18535 0.42 +0.5 3,816,592 + ABIE41_RS18535 0.54 -0.0 3,816,710 - ABIE41_RS18535 0.63 -2.7 3,816,779 + ABIE41_RS18535 0.69 -0.3 3,816,779 + ABIE41_RS18535 0.69 -2.9 3,816,779 + ABIE41_RS18535 0.69 -0.3 3,816,779 + ABIE41_RS18535 0.69 -1.9 3,816,780 - ABIE41_RS18535 0.69 +0.1 3,816,780 - ABIE41_RS18535 0.69 -0.6 3,816,780 - ABIE41_RS18535 0.69 -0.1
Or see this region's nucleotide sequence