Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15830

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15825 and ABIE41_RS15830 are separated by 12 nucleotidesABIE41_RS15830 and ABIE41_RS15835 are separated by 11 nucleotides ABIE41_RS15825: ABIE41_RS15825 - transcription-repair coupling factor, at 3,243,525 to 3,247,073 _RS15825 ABIE41_RS15830: ABIE41_RS15830 - AMP-binding protein, at 3,247,086 to 3,248,102 _RS15830 ABIE41_RS15835: ABIE41_RS15835 - extracellular solute-binding protein, at 3,248,114 to 3,249,934 _RS15835 Position (kb) 3247 3248 3249Strain fitness (log2 ratio) -3 -2 -1 0 1at 3246.193 kb on - strand, within ABIE41_RS15825at 3246.193 kb on - strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.204 kb on + strand, within ABIE41_RS15825at 3246.205 kb on - strand, within ABIE41_RS15825at 3246.205 kb on - strand, within ABIE41_RS15825at 3246.264 kb on - strand, within ABIE41_RS15825at 3246.310 kb on - strand, within ABIE41_RS15825at 3246.518 kb on + strand, within ABIE41_RS15825at 3246.519 kb on - strand, within ABIE41_RS15825at 3246.543 kb on + strand, within ABIE41_RS15825at 3246.543 kb on + strand, within ABIE41_RS15825at 3246.660 kb on + strand, within ABIE41_RS15825at 3246.660 kb on + strand, within ABIE41_RS15825at 3246.661 kb on - strand, within ABIE41_RS15825at 3246.693 kb on + strand, within ABIE41_RS15825at 3246.921 kb on + strandat 3246.921 kb on + strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3246.922 kb on - strandat 3247.610 kb on + strand, within ABIE41_RS15830at 3247.652 kb on + strand, within ABIE41_RS15830at 3248.235 kb on + strandat 3248.236 kb on - strandat 3248.253 kb on + strandat 3248.253 kb on + strandat 3248.254 kb on - strandat 3248.254 kb on - strandat 3248.337 kb on - strand, within ABIE41_RS15835at 3248.373 kb on + strand, within ABIE41_RS15835at 3248.503 kb on - strand, within ABIE41_RS15835at 3248.565 kb on + strand, within ABIE41_RS15835at 3248.565 kb on + strand, within ABIE41_RS15835

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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3,246,193 - ABIE41_RS15825 0.75 -0.6
3,246,193 - ABIE41_RS15825 0.75 +0.2
3,246,204 + ABIE41_RS15825 0.75 -0.3
3,246,204 + ABIE41_RS15825 0.75 -0.4
3,246,204 + ABIE41_RS15825 0.75 -0.4
3,246,205 - ABIE41_RS15825 0.76 +0.5
3,246,205 - ABIE41_RS15825 0.76 -1.1
3,246,264 - ABIE41_RS15825 0.77 +0.7
3,246,310 - ABIE41_RS15825 0.78 -1.9
3,246,518 + ABIE41_RS15825 0.84 +0.4
3,246,519 - ABIE41_RS15825 0.84 +0.0
3,246,543 + ABIE41_RS15825 0.85 -0.6
3,246,543 + ABIE41_RS15825 0.85 -3.4
3,246,660 + ABIE41_RS15825 0.88 +1.0
3,246,660 + ABIE41_RS15825 0.88 +0.6
3,246,661 - ABIE41_RS15825 0.88 +0.8
3,246,693 + ABIE41_RS15825 0.89 +0.0
3,246,921 + -1.8
3,246,921 + -0.9
3,246,922 - -1.5
3,246,922 - -1.3
3,246,922 - -0.7
3,246,922 - +0.3
3,247,610 + ABIE41_RS15830 0.52 +1.0
3,247,652 + ABIE41_RS15830 0.56 +1.5
3,248,235 + -1.9
3,248,236 - -1.5
3,248,253 + +0.3
3,248,253 + -2.7
3,248,254 - -1.0
3,248,254 - -0.8
3,248,337 - ABIE41_RS15835 0.12 -1.1
3,248,373 + ABIE41_RS15835 0.14 -1.5
3,248,503 - ABIE41_RS15835 0.21 +1.0
3,248,565 + ABIE41_RS15835 0.25 -2.7
3,248,565 + ABIE41_RS15835 0.25 -1.0

Or see this region's nucleotide sequence