Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15825 and ABIE41_RS15830 are separated by 12 nucleotides ABIE41_RS15830 and ABIE41_RS15835 are separated by 11 nucleotides
ABIE41_RS15825: ABIE41_RS15825 - transcription-repair coupling factor, at 3,243,525 to 3,247,073
_RS15825
ABIE41_RS15830: ABIE41_RS15830 - AMP-binding protein, at 3,247,086 to 3,248,102
_RS15830
ABIE41_RS15835: ABIE41_RS15835 - extracellular solute-binding protein, at 3,248,114 to 3,249,934
_RS15835
Position (kb)
3247
3248
3249 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3246.193 kb on - strand, within ABIE41_RS15825 at 3246.193 kb on - strand, within ABIE41_RS15825 at 3246.204 kb on + strand, within ABIE41_RS15825 at 3246.204 kb on + strand, within ABIE41_RS15825 at 3246.204 kb on + strand, within ABIE41_RS15825 at 3246.205 kb on - strand, within ABIE41_RS15825 at 3246.205 kb on - strand, within ABIE41_RS15825 at 3246.264 kb on - strand, within ABIE41_RS15825 at 3246.310 kb on - strand, within ABIE41_RS15825 at 3246.518 kb on + strand, within ABIE41_RS15825 at 3246.519 kb on - strand, within ABIE41_RS15825 at 3246.543 kb on + strand, within ABIE41_RS15825 at 3246.543 kb on + strand, within ABIE41_RS15825 at 3246.660 kb on + strand, within ABIE41_RS15825 at 3246.660 kb on + strand, within ABIE41_RS15825 at 3246.661 kb on - strand, within ABIE41_RS15825 at 3246.693 kb on + strand, within ABIE41_RS15825 at 3246.921 kb on + strand at 3246.921 kb on + strand at 3246.922 kb on - strand at 3246.922 kb on - strand at 3246.922 kb on - strand at 3246.922 kb on - strand at 3247.610 kb on + strand, within ABIE41_RS15830 at 3247.652 kb on + strand, within ABIE41_RS15830 at 3248.235 kb on + strand at 3248.236 kb on - strand at 3248.253 kb on + strand at 3248.253 kb on + strand at 3248.254 kb on - strand at 3248.254 kb on - strand at 3248.337 kb on - strand, within ABIE41_RS15835 at 3248.373 kb on + strand, within ABIE41_RS15835 at 3248.503 kb on - strand, within ABIE41_RS15835 at 3248.565 kb on + strand, within ABIE41_RS15835 at 3248.565 kb on + strand, within ABIE41_RS15835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 3,246,193 - ABIE41_RS15825 0.75 -0.6 3,246,193 - ABIE41_RS15825 0.75 +0.2 3,246,204 + ABIE41_RS15825 0.75 -0.3 3,246,204 + ABIE41_RS15825 0.75 -0.4 3,246,204 + ABIE41_RS15825 0.75 -0.4 3,246,205 - ABIE41_RS15825 0.76 +0.5 3,246,205 - ABIE41_RS15825 0.76 -1.1 3,246,264 - ABIE41_RS15825 0.77 +0.7 3,246,310 - ABIE41_RS15825 0.78 -1.9 3,246,518 + ABIE41_RS15825 0.84 +0.4 3,246,519 - ABIE41_RS15825 0.84 +0.0 3,246,543 + ABIE41_RS15825 0.85 -0.6 3,246,543 + ABIE41_RS15825 0.85 -3.4 3,246,660 + ABIE41_RS15825 0.88 +1.0 3,246,660 + ABIE41_RS15825 0.88 +0.6 3,246,661 - ABIE41_RS15825 0.88 +0.8 3,246,693 + ABIE41_RS15825 0.89 +0.0 3,246,921 + -1.8 3,246,921 + -0.9 3,246,922 - -1.5 3,246,922 - -1.3 3,246,922 - -0.7 3,246,922 - +0.3 3,247,610 + ABIE41_RS15830 0.52 +1.0 3,247,652 + ABIE41_RS15830 0.56 +1.5 3,248,235 + -1.9 3,248,236 - -1.5 3,248,253 + +0.3 3,248,253 + -2.7 3,248,254 - -1.0 3,248,254 - -0.8 3,248,337 - ABIE41_RS15835 0.12 -1.1 3,248,373 + ABIE41_RS15835 0.14 -1.5 3,248,503 - ABIE41_RS15835 0.21 +1.0 3,248,565 + ABIE41_RS15835 0.25 -2.7 3,248,565 + ABIE41_RS15835 0.25 -1.0
Or see this region's nucleotide sequence