Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15775 and ABIE41_RS15780 are separated by 42 nucleotides ABIE41_RS15780 and ABIE41_RS15785 are separated by 19 nucleotides ABIE41_RS15785 and ABIE41_RS15790 overlap by 4 nucleotides
ABIE41_RS15775: ABIE41_RS15775 - VOC family protein, at 3,230,905 to 3,231,804
_RS15775
ABIE41_RS15780: ABIE41_RS15780 - DUF350 domain-containing protein, at 3,231,847 to 3,232,251
_RS15780
ABIE41_RS15785: ABIE41_RS15785 - glucans biosynthesis glucosyltransferase MdoH, at 3,232,271 to 3,234,445
_RS15785
ABIE41_RS15790: ABIE41_RS15790 - glucan biosynthesis protein, at 3,234,442 to 3,236,004
_RS15790
Position (kb) 3232
3233
3234
3235 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3231.326 kb on + strand, within ABIE41_RS15775 at 3231.326 kb on + strand, within ABIE41_RS15775 at 3231.326 kb on + strand, within ABIE41_RS15775 at 3231.327 kb on - strand, within ABIE41_RS15775 at 3231.327 kb on - strand, within ABIE41_RS15775 at 3231.327 kb on - strand, within ABIE41_RS15775 at 3231.327 kb on - strand, within ABIE41_RS15775 at 3231.559 kb on + strand, within ABIE41_RS15775 at 3231.622 kb on + strand, within ABIE41_RS15775 at 3231.622 kb on + strand, within ABIE41_RS15775 at 3231.622 kb on + strand, within ABIE41_RS15775 at 3231.622 kb on + strand, within ABIE41_RS15775 at 3231.623 kb on - strand, within ABIE41_RS15775 at 3231.623 kb on - strand, within ABIE41_RS15775 at 3231.922 kb on + strand, within ABIE41_RS15780 at 3231.923 kb on - strand, within ABIE41_RS15780 at 3231.934 kb on + strand, within ABIE41_RS15780 at 3232.249 kb on + strand at 3232.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 3,231,326 + ABIE41_RS15775 0.47 +0.4 3,231,326 + ABIE41_RS15775 0.47 +0.6 3,231,326 + ABIE41_RS15775 0.47 -2.1 3,231,327 - ABIE41_RS15775 0.47 -0.2 3,231,327 - ABIE41_RS15775 0.47 +0.9 3,231,327 - ABIE41_RS15775 0.47 +0.4 3,231,327 - ABIE41_RS15775 0.47 -1.4 3,231,559 + ABIE41_RS15775 0.73 -0.9 3,231,622 + ABIE41_RS15775 0.80 +1.3 3,231,622 + ABIE41_RS15775 0.80 +3.0 3,231,622 + ABIE41_RS15775 0.80 +0.3 3,231,622 + ABIE41_RS15775 0.80 +0.7 3,231,623 - ABIE41_RS15775 0.80 +0.6 3,231,623 - ABIE41_RS15775 0.80 -0.1 3,231,922 + ABIE41_RS15780 0.19 -0.5 3,231,923 - ABIE41_RS15780 0.19 -0.2 3,231,934 + ABIE41_RS15780 0.21 -0.7 3,232,249 + +1.0 3,232,277 - +0.2
Or see this region's nucleotide sequence