Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11980

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11975 and ABIE41_RS11980 are separated by 152 nucleotidesABIE41_RS11980 and ABIE41_RS11985 are separated by 61 nucleotidesABIE41_RS11985 and ABIE41_RS11990 are separated by 86 nucleotides ABIE41_RS11975: ABIE41_RS11975 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 2,447,211 to 2,448,419 _RS11975 ABIE41_RS11980: ABIE41_RS11980 - GatB/YqeY domain-containing protein, at 2,448,572 to 2,449,033 _RS11980 ABIE41_RS11985: ABIE41_RS11985 - hypothetical protein, at 2,449,095 to 2,449,592 _RS11985 ABIE41_RS11990: ABIE41_RS11990 - DNA primase, at 2,449,679 to 2,451,583 _RS11990 Position (kb) 2448 2449 2450Strain fitness (log2 ratio) -1 0 1 2 3 4at 2448.424 kb on - strandat 2448.424 kb on - strandat 2448.424 kb on - strandat 2448.785 kb on + strand, within ABIE41_RS11980at 2448.785 kb on + strand, within ABIE41_RS11980at 2448.786 kb on - strand, within ABIE41_RS11980at 2448.786 kb on - strand, within ABIE41_RS11980at 2448.851 kb on + strand, within ABIE41_RS11980at 2448.851 kb on + strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2449.209 kb on + strand, within ABIE41_RS11985at 2449.249 kb on - strand, within ABIE41_RS11985at 2449.302 kb on + strand, within ABIE41_RS11985at 2449.590 kb on + strandat 2449.670 kb on + strandat 2449.670 kb on + strandat 2449.670 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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2,448,424 - +0.4
2,448,424 - +4.2
2,448,424 - +0.9
2,448,785 + ABIE41_RS11980 0.46 -0.2
2,448,785 + ABIE41_RS11980 0.46 +1.8
2,448,786 - ABIE41_RS11980 0.46 -0.2
2,448,786 - ABIE41_RS11980 0.46 -0.3
2,448,851 + ABIE41_RS11980 0.60 -0.8
2,448,851 + ABIE41_RS11980 0.60 +0.4
2,448,852 - ABIE41_RS11980 0.61 -1.2
2,448,852 - ABIE41_RS11980 0.61 +1.4
2,448,852 - ABIE41_RS11980 0.61 -0.6
2,448,852 - ABIE41_RS11980 0.61 -0.2
2,448,852 - ABIE41_RS11980 0.61 +0.4
2,449,209 + ABIE41_RS11985 0.23 -1.6
2,449,249 - ABIE41_RS11985 0.31 +0.1
2,449,302 + ABIE41_RS11985 0.42 -0.2
2,449,590 + -0.4
2,449,670 + +0.1
2,449,670 + -1.0
2,449,670 + +0.6

Or see this region's nucleotide sequence