Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05355

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05350 and ABIE41_RS05355 are separated by 6 nucleotidesABIE41_RS05355 and ABIE41_RS05360 overlap by 1 nucleotides ABIE41_RS05350: ABIE41_RS05350 - aspartate aminotransferase family protein, at 1,107,006 to 1,108,355 _RS05350 ABIE41_RS05355: ABIE41_RS05355 - acetate/propionate family kinase, at 1,108,362 to 1,109,555 _RS05355 ABIE41_RS05360: ABIE41_RS05360 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 1,109,555 to 1,110,970 _RS05360 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1107.415 kb on - strand, within ABIE41_RS05350at 1107.735 kb on + strand, within ABIE41_RS05350at 1107.735 kb on + strand, within ABIE41_RS05350at 1107.736 kb on - strand, within ABIE41_RS05350at 1107.840 kb on + strand, within ABIE41_RS05350at 1107.841 kb on - strand, within ABIE41_RS05350at 1107.990 kb on + strand, within ABIE41_RS05350at 1107.990 kb on + strand, within ABIE41_RS05350at 1107.990 kb on + strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1107.991 kb on - strand, within ABIE41_RS05350at 1108.041 kb on + strand, within ABIE41_RS05350at 1108.041 kb on + strand, within ABIE41_RS05350at 1108.041 kb on + strand, within ABIE41_RS05350at 1108.041 kb on + strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.042 kb on - strand, within ABIE41_RS05350at 1108.206 kb on + strand, within ABIE41_RS05350at 1108.206 kb on + strand, within ABIE41_RS05350at 1108.206 kb on + strand, within ABIE41_RS05350at 1108.206 kb on + strand, within ABIE41_RS05350at 1108.207 kb on - strand, within ABIE41_RS05350at 1108.380 kb on + strandat 1108.380 kb on + strandat 1108.381 kb on - strandat 1108.643 kb on + strand, within ABIE41_RS05355at 1108.643 kb on + strand, within ABIE41_RS05355at 1108.644 kb on - strand, within ABIE41_RS05355at 1108.644 kb on - strand, within ABIE41_RS05355at 1108.644 kb on - strand, within ABIE41_RS05355at 1108.644 kb on - strand, within ABIE41_RS05355at 1108.745 kb on - strand, within ABIE41_RS05355at 1108.996 kb on + strand, within ABIE41_RS05355at 1108.996 kb on + strand, within ABIE41_RS05355at 1108.997 kb on - strand, within ABIE41_RS05355at 1108.997 kb on - strand, within ABIE41_RS05355at 1108.997 kb on - strand, within ABIE41_RS05355at 1109.721 kb on + strand, within ABIE41_RS05360at 1109.722 kb on - strand, within ABIE41_RS05360at 1109.722 kb on - strand, within ABIE41_RS05360at 1109.990 kb on - strand, within ABIE41_RS05360at 1110.096 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.117 kb on + strand, within ABIE41_RS05360at 1110.118 kb on - strand, within ABIE41_RS05360at 1110.118 kb on - strand, within ABIE41_RS05360at 1110.118 kb on - strand, within ABIE41_RS05360at 1110.118 kb on - strand, within ABIE41_RS05360at 1110.118 kb on - strand, within ABIE41_RS05360at 1110.481 kb on - strand, within ABIE41_RS05360

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,107,415 - ABIE41_RS05350 0.30 -0.3
1,107,735 + ABIE41_RS05350 0.54 -0.9
1,107,735 + ABIE41_RS05350 0.54 +0.6
1,107,736 - ABIE41_RS05350 0.54 +0.1
1,107,840 + ABIE41_RS05350 0.62 +0.7
1,107,841 - ABIE41_RS05350 0.62 +1.3
1,107,990 + ABIE41_RS05350 0.73 +0.9
1,107,990 + ABIE41_RS05350 0.73 +0.1
1,107,990 + ABIE41_RS05350 0.73 +0.3
1,107,991 - ABIE41_RS05350 0.73 +1.3
1,107,991 - ABIE41_RS05350 0.73 +0.3
1,107,991 - ABIE41_RS05350 0.73 +0.4
1,107,991 - ABIE41_RS05350 0.73 +0.4
1,107,991 - ABIE41_RS05350 0.73 +1.3
1,107,991 - ABIE41_RS05350 0.73 +0.2
1,108,041 + ABIE41_RS05350 0.77 +0.4
1,108,041 + ABIE41_RS05350 0.77 -1.5
1,108,041 + ABIE41_RS05350 0.77 +0.8
1,108,041 + ABIE41_RS05350 0.77 -1.3
1,108,042 - ABIE41_RS05350 0.77 -2.0
1,108,042 - ABIE41_RS05350 0.77 +1.6
1,108,042 - ABIE41_RS05350 0.77 +0.4
1,108,042 - ABIE41_RS05350 0.77 +1.0
1,108,042 - ABIE41_RS05350 0.77 +0.5
1,108,042 - ABIE41_RS05350 0.77 +2.1
1,108,042 - ABIE41_RS05350 0.77 +0.7
1,108,206 + ABIE41_RS05350 0.89 +1.4
1,108,206 + ABIE41_RS05350 0.89 -0.6
1,108,206 + ABIE41_RS05350 0.89 -0.1
1,108,206 + ABIE41_RS05350 0.89 +0.5
1,108,207 - ABIE41_RS05350 0.89 +0.1
1,108,380 + +0.3
1,108,380 + -0.4
1,108,381 - -0.3
1,108,643 + ABIE41_RS05355 0.24 +0.3
1,108,643 + ABIE41_RS05355 0.24 +0.9
1,108,644 - ABIE41_RS05355 0.24 -0.2
1,108,644 - ABIE41_RS05355 0.24 +0.0
1,108,644 - ABIE41_RS05355 0.24 -0.8
1,108,644 - ABIE41_RS05355 0.24 +1.9
1,108,745 - ABIE41_RS05355 0.32 +0.4
1,108,996 + ABIE41_RS05355 0.53 +2.9
1,108,996 + ABIE41_RS05355 0.53 +0.7
1,108,997 - ABIE41_RS05355 0.53 +0.3
1,108,997 - ABIE41_RS05355 0.53 -0.7
1,108,997 - ABIE41_RS05355 0.53 +1.1
1,109,721 + ABIE41_RS05360 0.12 -0.3
1,109,722 - ABIE41_RS05360 0.12 +0.3
1,109,722 - ABIE41_RS05360 0.12 +1.0
1,109,990 - ABIE41_RS05360 0.31 +1.4
1,110,096 + ABIE41_RS05360 0.38 -0.3
1,110,117 + ABIE41_RS05360 0.40 +1.0
1,110,117 + ABIE41_RS05360 0.40 +0.8
1,110,117 + ABIE41_RS05360 0.40 +0.2
1,110,117 + ABIE41_RS05360 0.40 +0.3
1,110,117 + ABIE41_RS05360 0.40 +1.3
1,110,117 + ABIE41_RS05360 0.40 +1.0
1,110,118 - ABIE41_RS05360 0.40 +0.4
1,110,118 - ABIE41_RS05360 0.40 +1.5
1,110,118 - ABIE41_RS05360 0.40 +0.1
1,110,118 - ABIE41_RS05360 0.40 -0.4
1,110,118 - ABIE41_RS05360 0.40 +0.3
1,110,481 - ABIE41_RS05360 0.65 +0.9

Or see this region's nucleotide sequence