Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04680

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04675 and ABIE41_RS04680 are separated by 55 nucleotidesABIE41_RS04680 and ABIE41_RS04685 are separated by 69 nucleotides ABIE41_RS04675: ABIE41_RS04675 - transcription termination factor Rho, at 972,512 to 973,777 _RS04675 ABIE41_RS04680: ABIE41_RS04680 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 973,833 to 975,146 _RS04680 ABIE41_RS04685: ABIE41_RS04685 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 975,216 to 977,099 _RS04685 Position (kb) 973 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2at 974.396 kb on + strand, within ABIE41_RS04680at 974.397 kb on - strand, within ABIE41_RS04680at 974.397 kb on - strand, within ABIE41_RS04680at 974.528 kb on + strand, within ABIE41_RS04680at 974.529 kb on - strand, within ABIE41_RS04680at 974.529 kb on - strand, within ABIE41_RS04680at 975.175 kb on + strandat 975.243 kb on + strandat 975.535 kb on - strand, within ABIE41_RS04685

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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974,396 + ABIE41_RS04680 0.43 +0.6
974,397 - ABIE41_RS04680 0.43 +1.3
974,397 - ABIE41_RS04680 0.43 +0.3
974,528 + ABIE41_RS04680 0.53 +2.2
974,529 - ABIE41_RS04680 0.53 -1.8
974,529 - ABIE41_RS04680 0.53 +0.0
975,175 + +0.9
975,243 + -0.8
975,535 - ABIE41_RS04685 0.17 +0.3

Or see this region's nucleotide sequence