Strain Fitness in Pseudomonas sp. RS175 around PFR28_00061

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00059 and PFR28_00060 overlap by 4 nucleotidesPFR28_00060 and PFR28_00061 overlap by 4 nucleotidesPFR28_00061 and PFR28_00062 overlap by 4 nucleotidesPFR28_00062 and PFR28_00063 are separated by 150 nucleotides PFR28_00059: PFR28_00059 - hypothetical protein, at 67,076 to 69,886 _00059 PFR28_00060: PFR28_00060 - hypothetical protein, at 69,883 to 70,554 _00060 PFR28_00061: PFR28_00061 - Lactate utilization protein B, at 70,551 to 72,008 _00061 PFR28_00062: PFR28_00062 - Lactate utilization protein A, at 72,005 to 72,829 _00062 PFR28_00063: PFR28_00063 - Glycolate permease GlcA, at 72,980 to 74,671 _00063 Position (kb) 70 71 72 73Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 69.777 kb on + strandat 69.778 kb on - strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 70.037 kb on + strand, within PFR28_00060at 70.233 kb on - strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.343 kb on - strand, within PFR28_00060at 70.343 kb on - strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.455 kb on - strand, within PFR28_00060at 70.455 kb on - strand, within PFR28_00060at 70.769 kb on - strand, within PFR28_00061at 70.979 kb on - strand, within PFR28_00061at 70.991 kb on - strand, within PFR28_00061at 71.013 kb on - strand, within PFR28_00061at 71.014 kb on + strand, within PFR28_00061at 71.014 kb on + strand, within PFR28_00061at 71.015 kb on - strand, within PFR28_00061at 71.015 kb on - strand, within PFR28_00061at 71.033 kb on + strand, within PFR28_00061at 71.034 kb on - strand, within PFR28_00061at 71.182 kb on + strand, within PFR28_00061at 71.182 kb on + strand, within PFR28_00061at 71.182 kb on + strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.183 kb on - strand, within PFR28_00061at 71.461 kb on + strand, within PFR28_00061at 71.461 kb on + strand, within PFR28_00061at 71.461 kb on + strand, within PFR28_00061at 71.462 kb on - strand, within PFR28_00061at 71.462 kb on - strand, within PFR28_00061at 71.528 kb on + strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.529 kb on - strand, within PFR28_00061at 71.739 kb on + strand, within PFR28_00061at 71.740 kb on - strand, within PFR28_00061at 71.740 kb on - strand, within PFR28_00061at 72.414 kb on + strand, within PFR28_00062at 72.414 kb on + strand, within PFR28_00062at 72.414 kb on + strand, within PFR28_00062at 72.415 kb on - strand, within PFR28_00062at 72.415 kb on - strand, within PFR28_00062at 72.481 kb on - strand, within PFR28_00062at 72.600 kb on + strand, within PFR28_00062at 72.600 kb on + strand, within PFR28_00062at 72.601 kb on - strand, within PFR28_00062at 72.729 kb on + strand, within PFR28_00062at 72.729 kb on + strand, within PFR28_00062at 72.813 kb on + strandat 72.880 kb on + strandat 72.880 kb on + strandat 72.881 kb on - strandat 72.882 kb on + strandat 72.882 kb on + strandat 72.882 kb on + strandat 72.882 kb on + strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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69,777 + -2.1
69,778 - -1.0
69,854 + -1.4
69,854 + -0.5
69,854 + +0.1
69,854 + -2.0
69,854 + -2.7
69,854 + +0.0
69,854 + -1.0
69,854 + +0.7
69,855 - -0.6
69,855 - -0.9
69,855 - -2.0
69,855 - -0.8
69,855 - -0.5
69,855 - -0.1
69,855 - +0.8
70,037 + PFR28_00060 0.23 -3.0
70,233 - PFR28_00060 0.52 -2.0
70,242 + PFR28_00060 0.53 -2.9
70,242 + PFR28_00060 0.53 -2.0
70,242 + PFR28_00060 0.53 -3.4
70,242 + PFR28_00060 0.53 -4.6
70,243 - PFR28_00060 0.54 -3.6
70,243 - PFR28_00060 0.54 -5.2
70,243 - PFR28_00060 0.54 -3.0
70,243 - PFR28_00060 0.54 -2.7
70,243 - PFR28_00060 0.54 -4.3
70,343 - PFR28_00060 0.68 -2.0
70,343 - PFR28_00060 0.68 -3.4
70,454 + PFR28_00060 0.85 -4.1
70,454 + PFR28_00060 0.85 -2.2
70,454 + PFR28_00060 0.85 -2.6
70,454 + PFR28_00060 0.85 -0.7
70,455 - PFR28_00060 0.85 -3.9
70,455 - PFR28_00060 0.85 -1.2
70,769 - PFR28_00061 0.15 -4.3
70,979 - PFR28_00061 0.29 -4.1
70,991 - PFR28_00061 0.30 -1.2
71,013 - PFR28_00061 0.32 -1.5
71,014 + PFR28_00061 0.32 -2.2
71,014 + PFR28_00061 0.32 -2.3
71,015 - PFR28_00061 0.32 -3.8
71,015 - PFR28_00061 0.32 -2.5
71,033 + PFR28_00061 0.33 -4.0
71,034 - PFR28_00061 0.33 -3.0
71,182 + PFR28_00061 0.43 -3.3
71,182 + PFR28_00061 0.43 -2.5
71,182 + PFR28_00061 0.43 -3.7
71,183 - PFR28_00061 0.43 -3.0
71,183 - PFR28_00061 0.43 -3.9
71,183 - PFR28_00061 0.43 -4.1
71,183 - PFR28_00061 0.43 -3.7
71,183 - PFR28_00061 0.43 -3.9
71,183 - PFR28_00061 0.43 -2.4
71,461 + PFR28_00061 0.62 -2.8
71,461 + PFR28_00061 0.62 -1.9
71,461 + PFR28_00061 0.62 -3.6
71,462 - PFR28_00061 0.62 -3.7
71,462 - PFR28_00061 0.62 -3.9
71,528 + PFR28_00061 0.67 -2.9
71,529 - PFR28_00061 0.67 -3.2
71,529 - PFR28_00061 0.67 -5.4
71,529 - PFR28_00061 0.67 -3.6
71,529 - PFR28_00061 0.67 -1.5
71,529 - PFR28_00061 0.67 -1.9
71,529 - PFR28_00061 0.67 -5.0
71,529 - PFR28_00061 0.67 -4.0
71,739 + PFR28_00061 0.81 -2.4
71,740 - PFR28_00061 0.82 -2.4
71,740 - PFR28_00061 0.82 -2.8
72,414 + PFR28_00062 0.50 -4.1
72,414 + PFR28_00062 0.50 -4.2
72,414 + PFR28_00062 0.50 -4.6
72,415 - PFR28_00062 0.50 -2.4
72,415 - PFR28_00062 0.50 -1.5
72,481 - PFR28_00062 0.58 -1.3
72,600 + PFR28_00062 0.72 -4.7
72,600 + PFR28_00062 0.72 -3.9
72,601 - PFR28_00062 0.72 -2.4
72,729 + PFR28_00062 0.88 -0.7
72,729 + PFR28_00062 0.88 -4.1
72,813 + -3.7
72,880 + -0.8
72,880 + -3.8
72,881 - -3.0
72,882 + -2.5
72,882 + -4.3
72,882 + -3.5
72,882 + -1.9
72,883 - -4.7
72,883 - -3.3
72,883 - -4.1
72,883 - -4.6
72,883 - -3.2
72,883 - -2.9
72,883 - -2.4
72,883 - -1.5
72,891 + -5.3

Or see this region's nucleotide sequence