Strain Fitness in Pseudomonas sp. RS175 around PFR28_02004

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
2,276,325	+				-1.5
2,276,325	+				-0.9
2,276,325	+				+1.0
2,276,325	+				+0.2
2,276,325	+				+0.8
2,276,325	+				+0.9
2,276,326	-				+0.3
2,276,326	-				-0.3
2,276,363	+		PFR28_02003	0.11	-0.4
2,276,363	+		PFR28_02003	0.11	+0.2
2,276,363	+		PFR28_02003	0.11	+0.6
2,276,363	+		PFR28_02003	0.11	-1.5
2,276,363	+		PFR28_02003	0.11	+1.1
2,276,363	+		PFR28_02003	0.11	+1.6
2,276,364	-		PFR28_02003	0.11	-1.9
2,276,364	-		PFR28_02003	0.11	-2.7
2,276,364	-		PFR28_02003	0.11	-2.1
2,276,425	+		PFR28_02003	0.18	-2.4
2,276,425	+		PFR28_02003	0.18	-1.3
2,276,425	+		PFR28_02003	0.18	+0.6
2,276,425	+		PFR28_02003	0.18	+0.3
2,276,425	+		PFR28_02003	0.18	+0.1
2,276,426	-		PFR28_02003	0.18	+1.1
2,276,426	-		PFR28_02003	0.18	-4.0
2,276,426	-		PFR28_02003	0.18	-0.5
2,276,445	+		PFR28_02003	0.20	+1.1
2,276,445	+		PFR28_02003	0.20	+0.1
2,276,445	+		PFR28_02003	0.20	-0.1
2,276,445	+		PFR28_02003	0.20	-1.9
2,276,445	+		PFR28_02003	0.20	-0.3
2,276,446	-		PFR28_02003	0.20	+1.2
2,276,446	-		PFR28_02003	0.20	+2.2
2,276,446	-		PFR28_02003	0.20	+0.9
2,276,582	+		PFR28_02003	0.36	-2.5
2,276,583	-		PFR28_02003	0.36	+0.1
2,276,678	-		PFR28_02003	0.47	-0.5
2,276,800	+		PFR28_02003	0.61	+0.1
2,277,120	+				+1.1
2,277,120	+				-2.5
2,277,120	+				+0.3
2,277,120	+				+0.4
2,277,121	-				+2.4
2,277,121	-				+0.2
2,277,121	-				-0.5
2,277,121	-				+0.2
2,277,147	+				+0.6
2,277,147	+				+0.3
2,277,148	-				-1.5
2,277,173	-				-0.4
2,277,212	+				+1.7
2,277,212	+				-0.9
2,277,213	-				-0.5
2,277,231	+				-0.9
2,277,231	+				-3.4
2,277,232	-				+0.9
2,277,232	-				+0.2
2,277,232	-				+0.8
2,277,240	-				+1.3
2,277,265	+				-1.2
2,277,266	-				+0.4
2,277,276	-				-1.3
2,277,278	-				+1.1
2,277,316	+				-1.2
2,277,317	-				+0.8
2,277,317	-				-2.5
2,277,317	-				-1.2
2,277,379	-				+0.9
2,277,379	-				+1.3
2,277,419	-		PFR28_02004	0.15	-0.9
2,277,479	+		PFR28_02004	0.24	-0.2
2,277,480	-		PFR28_02004	0.24	-0.0
2,277,480	-		PFR28_02004	0.24	-1.0
2,277,480	-		PFR28_02004	0.24	+2.2
2,277,480	-		PFR28_02004	0.24	+0.3
2,277,549	+		PFR28_02004	0.35	-0.9
2,277,550	-		PFR28_02004	0.35	-1.7
2,277,551	+		PFR28_02004	0.35	-0.9
2,277,551	+		PFR28_02004	0.35	+1.1
2,277,551	+		PFR28_02004	0.35	+0.1
2,277,552	-		PFR28_02004	0.35	-0.5
2,277,552	-		PFR28_02004	0.35	+0.1
2,277,552	-		PFR28_02004	0.35	+3.2
2,277,592	+		PFR28_02004	0.42	+0.1
2,277,618	+		PFR28_02004	0.46	-3.4
2,277,618	+		PFR28_02004	0.46	+1.1
2,277,619	-		PFR28_02004	0.46	+0.8
2,277,619	-		PFR28_02004	0.46	-1.2
2,277,668	+		PFR28_02004	0.53	-2.6
2,277,671	+		PFR28_02004	0.54	+1.3
2,277,686	+		PFR28_02004	0.56	+0.3
2,277,687	-		PFR28_02004	0.56	+1.4
2,277,763	+		PFR28_02004	0.68	+1.8
2,277,764	-		PFR28_02004	0.68	-1.7
2,277,764	-		PFR28_02004	0.68	+4.3
2,277,765	+		PFR28_02004	0.68	+1.2
2,277,765	+		PFR28_02004	0.68	+0.2
2,277,766	-		PFR28_02004	0.69	+1.8
2,277,778	+		PFR28_02004	0.70	+2.6
2,277,778	+		PFR28_02004	0.70	+0.9
2,277,779	-		PFR28_02004	0.71	-1.5
2,277,779	-		PFR28_02004	0.71	+1.4
2,277,815	+		PFR28_02004	0.76	+1.2
2,277,849	-		PFR28_02004	0.81	+0.6
2,277,886	+		PFR28_02004	0.87	+0.1
2,277,953	-				-0.3
2,277,953	-				-0.7
2,277,956	+				+2.2
2,277,956	+				-0.6
2,277,957	-				+1.4
2,277,957	-				-3.0
2,277,957	-				+0.2
2,277,957	-				-1.5
2,277,957	-				-3.0
2,277,957	-				+0.8
2,277,988	+				+0.1
2,278,022	+				-0.6
2,278,169	+				+0.1
2,278,169	+				-0.9
2,278,169	+				-2.6
2,278,177	+				-2.2
2,278,223	-				+0.1
2,278,241	+				-0.9
2,278,263	+				-0.7
2,278,264	-				+0.3
2,278,266	+				+1.4
2,278,283	-				-1.4
2,278,483	+		PFR28_02005	0.24	-0.6
2,278,484	-		PFR28_02005	0.24	+1.0
2,278,484	-		PFR28_02005	0.24	+2.0
2,278,556	+		PFR28_02005	0.35	-1.9
2,278,556	+		PFR28_02005	0.35	-2.8
2,278,557	-		PFR28_02005	0.35	+0.1
2,278,557	-		PFR28_02005	0.35	+0.9
2,278,557	-		PFR28_02005	0.35	+0.7
2,278,557	-		PFR28_02005	0.35	-0.4
2,278,557	-		PFR28_02005	0.35	+1.1
2,278,557	-		PFR28_02005	0.35	+1.8
2,278,598	-		PFR28_02005	0.41	-0.2
2,278,598	-		PFR28_02005	0.41	+0.1
2,278,607	+		PFR28_02005	0.42	-0.6
2,278,610	+		PFR28_02005	0.43	-0.5
2,278,610	+		PFR28_02005	0.43	+1.2
2,278,610	+		PFR28_02005	0.43	-0.5
2,278,610	+		PFR28_02005	0.43	-0.5
2,278,611	-		PFR28_02005	0.43	-4.2
2,278,611	-		PFR28_02005	0.43	+1.9
2,278,611	-		PFR28_02005	0.43	-0.4
2,278,831	+		PFR28_02005	0.76	+2.4
2,278,831	+		PFR28_02005	0.76	-3.0
2,278,832	-		PFR28_02005	0.76	+1.0
2,278,849	-		PFR28_02005	0.78	-0.1
2,278,903	+		PFR28_02005	0.86	+1.8
2,278,903	+		PFR28_02005	0.86	+0.6
2,278,903	+		PFR28_02005	0.86	+1.4
2,278,903	+		PFR28_02005	0.86	+0.1
2,278,903	+		PFR28_02005	0.86	-0.1
2,278,904	-		PFR28_02005	0.87	+0.6
2,278,904	-		PFR28_02005	0.87	+0.0
2,278,904	-		PFR28_02005	0.87	-3.2
2,278,904	-		PFR28_02005	0.87	-0.6
2,278,923	+		PFR28_02005	0.89	+3.2