Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22385

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS22380 and ABIE41_RS22385 are separated by 178 nucleotidesABIE41_RS22385 and ABIE41_RS22390 are separated by 269 nucleotides ABIE41_RS22380: ABIE41_RS22380 - DEAD/DEAH box helicase, at 4,606,353 to 4,607,789 _RS22380 ABIE41_RS22385: ABIE41_RS22385 - cold-shock protein, at 4,607,968 to 4,608,177 _RS22385 ABIE41_RS22390: ABIE41_RS22390 - pyruvate, phosphate dikinase, at 4,608,447 to 4,611,132 _RS22390 Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4607.725 kb on + strandat 4607.725 kb on + strandat 4607.725 kb on + strandat 4607.778 kb on - strandat 4607.871 kb on - strandat 4607.871 kb on - strandat 4608.207 kb on + strandat 4608.207 kb on + strandat 4608.208 kb on - strandat 4608.208 kb on - strandat 4608.209 kb on + strandat 4608.209 kb on + strandat 4608.209 kb on + strandat 4608.210 kb on - strandat 4608.255 kb on + strandat 4608.342 kb on - strandat 4608.342 kb on - strandat 4608.355 kb on + strandat 4608.356 kb on - strandat 4608.356 kb on - strandat 4608.361 kb on - strandat 4608.536 kb on - strandat 4608.536 kb on - strandat 4608.536 kb on - strandat 4608.721 kb on + strand, within ABIE41_RS22390at 4608.721 kb on + strand, within ABIE41_RS22390at 4608.721 kb on + strand, within ABIE41_RS22390at 4608.722 kb on - strand, within ABIE41_RS22390at 4608.874 kb on + strand, within ABIE41_RS22390at 4608.874 kb on + strand, within ABIE41_RS22390at 4608.875 kb on - strand, within ABIE41_RS22390

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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4,607,725 + -0.2
4,607,725 + -1.9
4,607,725 + +0.9
4,607,778 - +0.2
4,607,871 - +1.0
4,607,871 - +1.4
4,608,207 + +0.2
4,608,207 + -1.0
4,608,208 - +0.7
4,608,208 - +1.3
4,608,209 + -0.1
4,608,209 + -0.5
4,608,209 + +0.8
4,608,210 - -0.0
4,608,255 + -2.4
4,608,342 - -1.8
4,608,342 - +0.2
4,608,355 + -0.8
4,608,356 - +0.9
4,608,356 - +0.0
4,608,361 - -0.1
4,608,536 - -0.7
4,608,536 - +4.0
4,608,536 - +1.4
4,608,721 + ABIE41_RS22390 0.10 -1.8
4,608,721 + ABIE41_RS22390 0.10 +0.8
4,608,721 + ABIE41_RS22390 0.10 -1.6
4,608,722 - ABIE41_RS22390 0.10 -0.2
4,608,874 + ABIE41_RS22390 0.16 -3.3
4,608,874 + ABIE41_RS22390 0.16 -0.5
4,608,875 - ABIE41_RS22390 0.16 +2.2

Or see this region's nucleotide sequence