Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21890 and ABIE41_RS21895 are separated by 3 nucleotides ABIE41_RS21895 and ABIE41_RS21900 are separated by 154 nucleotides
ABIE41_RS21890: ABIE41_RS21890 - MlaD family protein, at 4,499,708 to 4,500,853
_RS21890
ABIE41_RS21895: ABIE41_RS21895 - ATP-binding cassette domain-containing protein, at 4,500,857 to 4,501,579
_RS21895
ABIE41_RS21900: ABIE41_RS21900 - ABC transporter permease, at 4,501,734 to 4,502,921
_RS21900
Position (kb)
4500
4501
4502 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4500.143 kb on + strand, within ABIE41_RS21890 at 4500.144 kb on - strand, within ABIE41_RS21890 at 4500.571 kb on + strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890 at 4500.834 kb on + strand at 4500.835 kb on - strand at 4500.835 kb on - strand at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.859 kb on - strand at 4500.859 kb on - strand at 4500.859 kb on - strand at 4500.859 kb on - strand at 4500.919 kb on - strand at 4500.919 kb on - strand at 4501.020 kb on + strand, within ABIE41_RS21895 at 4501.044 kb on - strand, within ABIE41_RS21895 at 4501.312 kb on - strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.321 kb on + strand, within ABIE41_RS21895 at 4501.701 kb on - strand at 4501.726 kb on + strand at 4501.726 kb on + strand at 4501.991 kb on - strand, within ABIE41_RS21900 at 4502.079 kb on - strand, within ABIE41_RS21900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 4,500,143 + ABIE41_RS21890 0.38 -0.2 4,500,144 - ABIE41_RS21890 0.38 -0.1 4,500,571 + ABIE41_RS21890 0.75 -1.3 4,500,572 - ABIE41_RS21890 0.75 -0.1 4,500,572 - ABIE41_RS21890 0.75 -0.1 4,500,572 - ABIE41_RS21890 0.75 -0.5 4,500,834 + -0.7 4,500,835 - -2.0 4,500,835 - -1.3 4,500,858 + -0.7 4,500,858 + -0.1 4,500,858 + +1.9 4,500,858 + -1.2 4,500,858 + +0.9 4,500,859 - +0.6 4,500,859 - +1.0 4,500,859 - +1.1 4,500,859 - +0.7 4,500,919 - -0.8 4,500,919 - -1.3 4,501,020 + ABIE41_RS21895 0.23 -0.1 4,501,044 - ABIE41_RS21895 0.26 +0.5 4,501,312 - ABIE41_RS21895 0.63 -1.3 4,501,321 + ABIE41_RS21895 0.64 -1.5 4,501,321 + ABIE41_RS21895 0.64 +1.9 4,501,321 + ABIE41_RS21895 0.64 -0.2 4,501,321 + ABIE41_RS21895 0.64 -0.7 4,501,321 + ABIE41_RS21895 0.64 +0.3 4,501,321 + ABIE41_RS21895 0.64 -0.6 4,501,701 - +0.4 4,501,726 + -0.3 4,501,726 + +1.5 4,501,991 - ABIE41_RS21900 0.22 -1.1 4,502,079 - ABIE41_RS21900 0.29 -2.7
Or see this region's nucleotide sequence