Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13905 and ABIE41_RS13910 are separated by 132 nucleotides ABIE41_RS13910 and ABIE41_RS13915 overlap by 4 nucleotides ABIE41_RS13915 and ABIE41_RS13920 are separated by 4 nucleotides ABIE41_RS13920 and ABIE41_RS13925 are separated by 76 nucleotides
ABIE41_RS13905: ABIE41_RS13905 - hemolysin family protein, at 2,853,619 to 2,854,881
_RS13905
ABIE41_RS13910: ABIE41_RS13910 - sulfurtransferase/chromate resistance protein, at 2,855,014 to 2,855,847
_RS13910
ABIE41_RS13915: ABIE41_RS13915 - chromate efflux transporter, at 2,855,844 to 2,857,244
_RS13915
ABIE41_RS13920: ABIE41_RS13920 - hypothetical protein, at 2,857,249 to 2,857,566
_RS13920
ABIE41_RS13925: ABIE41_RS13925 - FAD-dependent monooxygenase, at 2,857,643 to 2,858,818
_RS13925
Position (kb)
2855
2856
2857
2858 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2854.925 kb on + strand at 2854.925 kb on + strand at 2854.926 kb on - strand at 2854.926 kb on - strand at 2854.926 kb on - strand at 2854.988 kb on - strand at 2855.030 kb on - strand at 2855.162 kb on - strand, within ABIE41_RS13910 at 2855.185 kb on + strand, within ABIE41_RS13910 at 2855.186 kb on - strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.755 kb on + strand, within ABIE41_RS13910 at 2855.756 kb on - strand, within ABIE41_RS13910 at 2855.756 kb on - strand, within ABIE41_RS13910 at 2855.767 kb on + strand at 2855.802 kb on + strand at 2855.802 kb on + strand at 2856.045 kb on + strand, within ABIE41_RS13915 at 2856.090 kb on + strand, within ABIE41_RS13915 at 2856.090 kb on + strand, within ABIE41_RS13915 at 2856.090 kb on + strand, within ABIE41_RS13915 at 2856.091 kb on - strand, within ABIE41_RS13915 at 2856.091 kb on - strand, within ABIE41_RS13915 at 2856.092 kb on + strand, within ABIE41_RS13915 at 2856.093 kb on - strand, within ABIE41_RS13915 at 2856.189 kb on + strand, within ABIE41_RS13915 at 2856.189 kb on + strand, within ABIE41_RS13915 at 2856.189 kb on + strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.190 kb on - strand, within ABIE41_RS13915 at 2856.198 kb on + strand, within ABIE41_RS13915 at 2856.199 kb on - strand, within ABIE41_RS13915 at 2856.723 kb on + strand, within ABIE41_RS13915 at 2856.723 kb on + strand, within ABIE41_RS13915 at 2856.723 kb on + strand, within ABIE41_RS13915 at 2856.723 kb on + strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.724 kb on - strand, within ABIE41_RS13915 at 2856.889 kb on + strand, within ABIE41_RS13915 at 2856.939 kb on + strand, within ABIE41_RS13915 at 2856.940 kb on - strand, within ABIE41_RS13915 at 2856.940 kb on - strand, within ABIE41_RS13915 at 2856.940 kb on - strand, within ABIE41_RS13915 at 2857.082 kb on - strand, within ABIE41_RS13915 at 2857.082 kb on - strand, within ABIE41_RS13915 at 2857.547 kb on + strand at 2857.548 kb on - strand at 2857.598 kb on + strand at 2857.598 kb on + strand at 2857.598 kb on + strand at 2857.603 kb on - strand at 2857.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 2,854,925 + -0.0 2,854,925 + -0.4 2,854,926 - +1.1 2,854,926 - -0.0 2,854,926 - -1.2 2,854,988 - +0.4 2,855,030 - +0.8 2,855,162 - ABIE41_RS13910 0.18 +0.1 2,855,185 + ABIE41_RS13910 0.21 -0.9 2,855,186 - ABIE41_RS13910 0.21 -0.2 2,855,755 + ABIE41_RS13910 0.89 -0.1 2,855,755 + ABIE41_RS13910 0.89 +0.2 2,855,755 + ABIE41_RS13910 0.89 +0.3 2,855,756 - ABIE41_RS13910 0.89 -1.0 2,855,756 - ABIE41_RS13910 0.89 +1.8 2,855,767 + +0.4 2,855,802 + -1.1 2,855,802 + +1.8 2,856,045 + ABIE41_RS13915 0.14 +2.4 2,856,090 + ABIE41_RS13915 0.18 -0.1 2,856,090 + ABIE41_RS13915 0.18 +0.3 2,856,090 + ABIE41_RS13915 0.18 +1.1 2,856,091 - ABIE41_RS13915 0.18 +0.8 2,856,091 - ABIE41_RS13915 0.18 +0.1 2,856,092 + ABIE41_RS13915 0.18 -0.0 2,856,093 - ABIE41_RS13915 0.18 +1.0 2,856,189 + ABIE41_RS13915 0.25 -0.3 2,856,189 + ABIE41_RS13915 0.25 -0.8 2,856,189 + ABIE41_RS13915 0.25 +1.4 2,856,190 - ABIE41_RS13915 0.25 +0.6 2,856,190 - ABIE41_RS13915 0.25 -2.0 2,856,190 - ABIE41_RS13915 0.25 +0.1 2,856,190 - ABIE41_RS13915 0.25 +0.1 2,856,190 - ABIE41_RS13915 0.25 +0.1 2,856,190 - ABIE41_RS13915 0.25 +0.3 2,856,190 - ABIE41_RS13915 0.25 +0.2 2,856,190 - ABIE41_RS13915 0.25 -0.5 2,856,198 + ABIE41_RS13915 0.25 -1.3 2,856,199 - ABIE41_RS13915 0.25 -0.5 2,856,723 + ABIE41_RS13915 0.63 +1.1 2,856,723 + ABIE41_RS13915 0.63 +1.1 2,856,723 + ABIE41_RS13915 0.63 -0.5 2,856,723 + ABIE41_RS13915 0.63 -3.6 2,856,724 - ABIE41_RS13915 0.63 +1.4 2,856,724 - ABIE41_RS13915 0.63 -0.7 2,856,724 - ABIE41_RS13915 0.63 +1.8 2,856,724 - ABIE41_RS13915 0.63 -0.1 2,856,724 - ABIE41_RS13915 0.63 -0.2 2,856,724 - ABIE41_RS13915 0.63 +0.9 2,856,724 - ABIE41_RS13915 0.63 -1.5 2,856,889 + ABIE41_RS13915 0.75 +1.0 2,856,939 + ABIE41_RS13915 0.78 +0.3 2,856,940 - ABIE41_RS13915 0.78 -0.2 2,856,940 - ABIE41_RS13915 0.78 -2.2 2,856,940 - ABIE41_RS13915 0.78 +0.1 2,857,082 - ABIE41_RS13915 0.88 +1.5 2,857,082 - ABIE41_RS13915 0.88 -0.8 2,857,547 + -0.2 2,857,548 - +0.4 2,857,598 + +0.1 2,857,598 + +0.0 2,857,598 + +0.0 2,857,603 - +0.6 2,857,603 - +1.3
Or see this region's nucleotide sequence