Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11390

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11385 and ABIE41_RS11390 overlap by 12 nucleotidesABIE41_RS11390 and ABIE41_RS11395 are separated by 32 nucleotidesABIE41_RS11395 and ABIE41_RS11400 are separated by 77 nucleotides ABIE41_RS11385: ABIE41_RS11385 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 2,338,130 to 2,339,344 _RS11385 ABIE41_RS11390: ABIE41_RS11390 - ATP-binding protein, at 2,339,333 to 2,340,754 _RS11390 ABIE41_RS11395: ABIE41_RS11395 - response regulator transcription factor, at 2,340,787 to 2,341,515 _RS11395 ABIE41_RS11400: ABIE41_RS11400 - MarR family transcriptional regulator, at 2,341,593 to 2,342,099 _RS11400 Position (kb) 2339 2340 2341Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2338.520 kb on + strand, within ABIE41_RS11385at 2338.643 kb on - strand, within ABIE41_RS11385at 2338.647 kb on - strand, within ABIE41_RS11385at 2338.647 kb on - strand, within ABIE41_RS11385at 2340.625 kb on - strandat 2341.581 kb on - strandat 2341.749 kb on + strand, within ABIE41_RS11400at 2341.749 kb on + strand, within ABIE41_RS11400at 2341.750 kb on - strand, within ABIE41_RS11400at 2341.750 kb on - strand, within ABIE41_RS11400

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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2,338,520 + ABIE41_RS11385 0.32 -2.5
2,338,643 - ABIE41_RS11385 0.42 -1.0
2,338,647 - ABIE41_RS11385 0.43 -1.4
2,338,647 - ABIE41_RS11385 0.43 +0.2
2,340,625 - -1.3
2,341,581 - +3.3
2,341,749 + ABIE41_RS11400 0.31 -0.3
2,341,749 + ABIE41_RS11400 0.31 +0.9
2,341,750 - ABIE41_RS11400 0.31 +0.2
2,341,750 - ABIE41_RS11400 0.31 +0.5

Or see this region's nucleotide sequence