Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08990

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08980 and ABIE41_RS08985 are separated by 28 nucleotidesABIE41_RS08985 and ABIE41_RS08990 are separated by 109 nucleotidesABIE41_RS08990 and ABIE41_RS08995 are separated by 134 nucleotides ABIE41_RS08980: ABIE41_RS08980 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,860,218 to 1,861,507 _RS08980 ABIE41_RS08985: ABIE41_RS08985 - MAPEG family protein, at 1,861,536 to 1,861,919 _RS08985 ABIE41_RS08990: ABIE41_RS08990 - dihydrolipoyl dehydrogenase, at 1,862,029 to 1,863,429 _RS08990 ABIE41_RS08995: ABIE41_RS08995 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,863,564 to 1,864,433 _RS08995 Position (kb) 1862 1863 1864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1861.818 kb on + strand, within ABIE41_RS08985at 1861.818 kb on + strand, within ABIE41_RS08985at 1861.830 kb on + strand, within ABIE41_RS08985at 1861.914 kb on + strandat 1861.915 kb on - strandat 1861.997 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.596 kb on + strandat 1863.596 kb on + strandat 1863.597 kb on - strandat 1863.597 kb on - strandat 1863.886 kb on - strand, within ABIE41_RS08995at 1863.886 kb on - strand, within ABIE41_RS08995at 1863.973 kb on - strand, within ABIE41_RS08995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,861,818 + ABIE41_RS08985 0.73 +0.2
1,861,818 + ABIE41_RS08985 0.73 -0.1
1,861,830 + ABIE41_RS08985 0.77 -1.4
1,861,914 + +0.2
1,861,915 - -0.8
1,861,997 + +0.6
1,863,423 + -0.5
1,863,423 + +0.1
1,863,423 + -0.1
1,863,423 + +1.8
1,863,423 + +1.8
1,863,424 - -2.2
1,863,424 - +2.1
1,863,424 - -0.9
1,863,424 - -2.1
1,863,596 + +0.8
1,863,596 + -1.4
1,863,597 - -1.9
1,863,597 - +1.1
1,863,886 - ABIE41_RS08995 0.37 +0.4
1,863,886 - ABIE41_RS08995 0.37 +0.8
1,863,973 - ABIE41_RS08995 0.47 -3.5

Or see this region's nucleotide sequence