Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07325

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS07315 and ABIE41_RS07320 are separated by 36 nucleotidesABIE41_RS07320 and ABIE41_RS07325 are separated by 31 nucleotidesABIE41_RS07325 and ABIE41_RS07330 are separated by 96 nucleotidesABIE41_RS07330 and ABIE41_RS07335 are separated by 151 nucleotides ABIE41_RS07315: ABIE41_RS07315 - GNAT family protein, at 1,508,619 to 1,509,317 _RS07315 ABIE41_RS07320: ABIE41_RS07320 - SDR family oxidoreductase, at 1,509,354 to 1,510,100 _RS07320 ABIE41_RS07325: ABIE41_RS07325 - D-erythronate dehydrogenase, at 1,510,132 to 1,511,115 _RS07325 ABIE41_RS07330: ABIE41_RS07330 - GNAT family N-acetyltransferase, at 1,511,212 to 1,511,865 _RS07330 ABIE41_RS07335: ABIE41_RS07335 - 50S ribosomal protein L27, at 1,512,017 to 1,512,283 _RS07335 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1 2at 1509.322 kb on - strandat 1509.597 kb on + strand, within ABIE41_RS07320at 1509.598 kb on - strand, within ABIE41_RS07320at 1509.780 kb on + strand, within ABIE41_RS07320at 1509.780 kb on + strand, within ABIE41_RS07320at 1509.780 kb on + strand, within ABIE41_RS07320at 1509.781 kb on - strand, within ABIE41_RS07320at 1509.786 kb on + strand, within ABIE41_RS07320at 1509.787 kb on - strand, within ABIE41_RS07320at 1509.787 kb on - strand, within ABIE41_RS07320at 1509.787 kb on - strand, within ABIE41_RS07320at 1510.030 kb on - strandat 1510.053 kb on + strandat 1510.054 kb on - strandat 1510.054 kb on - strandat 1510.054 kb on - strandat 1510.109 kb on - strandat 1510.137 kb on + strandat 1510.137 kb on + strandat 1510.137 kb on + strandat 1510.138 kb on - strandat 1510.138 kb on - strandat 1510.138 kb on - strandat 1510.414 kb on + strand, within ABIE41_RS07325at 1510.414 kb on + strand, within ABIE41_RS07325at 1510.414 kb on + strand, within ABIE41_RS07325at 1510.414 kb on + strand, within ABIE41_RS07325at 1510.415 kb on - strand, within ABIE41_RS07325at 1510.415 kb on - strand, within ABIE41_RS07325at 1510.415 kb on - strand, within ABIE41_RS07325at 1510.415 kb on - strand, within ABIE41_RS07325at 1510.477 kb on + strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.478 kb on - strand, within ABIE41_RS07325at 1510.882 kb on + strand, within ABIE41_RS07325at 1511.079 kb on + strandat 1511.552 kb on + strand, within ABIE41_RS07330at 1512.018 kb on + strandat 1512.018 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
remove
1,509,322 - +0.2
1,509,597 + ABIE41_RS07320 0.33 +0.5
1,509,598 - ABIE41_RS07320 0.33 -1.1
1,509,780 + ABIE41_RS07320 0.57 +0.4
1,509,780 + ABIE41_RS07320 0.57 -1.1
1,509,780 + ABIE41_RS07320 0.57 -0.6
1,509,781 - ABIE41_RS07320 0.57 -0.1
1,509,786 + ABIE41_RS07320 0.58 -0.9
1,509,787 - ABIE41_RS07320 0.58 -1.8
1,509,787 - ABIE41_RS07320 0.58 -0.3
1,509,787 - ABIE41_RS07320 0.58 +1.9
1,510,030 - -2.0
1,510,053 + -0.2
1,510,054 - +0.1
1,510,054 - -0.7
1,510,054 - -0.2
1,510,109 - -0.2
1,510,137 + -1.5
1,510,137 + -0.0
1,510,137 + +0.3
1,510,138 - -1.1
1,510,138 - +2.2
1,510,138 - +0.5
1,510,414 + ABIE41_RS07325 0.29 -0.7
1,510,414 + ABIE41_RS07325 0.29 +1.9
1,510,414 + ABIE41_RS07325 0.29 -0.0
1,510,414 + ABIE41_RS07325 0.29 -0.4
1,510,415 - ABIE41_RS07325 0.29 +0.7
1,510,415 - ABIE41_RS07325 0.29 +0.2
1,510,415 - ABIE41_RS07325 0.29 -0.3
1,510,415 - ABIE41_RS07325 0.29 +0.6
1,510,477 + ABIE41_RS07325 0.35 +1.2
1,510,478 - ABIE41_RS07325 0.35 -0.7
1,510,478 - ABIE41_RS07325 0.35 +0.1
1,510,478 - ABIE41_RS07325 0.35 -0.7
1,510,478 - ABIE41_RS07325 0.35 -1.3
1,510,478 - ABIE41_RS07325 0.35 -0.7
1,510,478 - ABIE41_RS07325 0.35 +0.2
1,510,882 + ABIE41_RS07325 0.76 -0.4
1,511,079 + -0.4
1,511,552 + ABIE41_RS07330 0.52 -0.1
1,512,018 + +1.4
1,512,018 + -0.6

Or see this region's nucleotide sequence