Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05000

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04985 and ABIE41_RS04990 are separated by 13 nucleotidesABIE41_RS04990 and ABIE41_RS04995 overlap by 4 nucleotidesABIE41_RS04995 and ABIE41_RS05000 are separated by 116 nucleotidesABIE41_RS05000 and ABIE41_RS05005 are separated by 4 nucleotidesABIE41_RS05005 and ABIE41_RS05010 are separated by 80 nucleotidesABIE41_RS05010 and ABIE41_RS05015 are separated by 142 nucleotides ABIE41_RS04985: ABIE41_RS04985 - heme ABC transporter permease, at 1,038,004 to 1,038,765 _RS04985 ABIE41_RS04990: ABIE41_RS04990 - heme exporter protein CcmD, at 1,038,779 to 1,038,952 _RS04990 ABIE41_RS04995: ABIE41_RS04995 - DsbE family thiol:disulfide interchange protein, at 1,038,949 to 1,039,554 _RS04995 ABIE41_RS05000: ABIE41_RS05000 - phosphoribosylformylglycinamidine synthase subunit PurQ, at 1,039,671 to 1,040,366 _RS05000 ABIE41_RS05005: ABIE41_RS05005 - phosphoribosylformylglycinamidine synthase subunit PurS, at 1,040,371 to 1,040,613 _RS05005 ABIE41_RS05010: ABIE41_RS05010 - hypothetical protein, at 1,040,694 to 1,041,200 _RS05010 ABIE41_RS05015: ABIE41_RS05015 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 1,041,343 to 1,042,137 _RS05015 Position (kb) 1039 1040 1041Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1039.014 kb on - strand, within ABIE41_RS04995at 1039.795 kb on + strand, within ABIE41_RS05000at 1039.795 kb on + strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.867 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.928 kb on - strand, within ABIE41_RS05000at 1039.928 kb on - strand, within ABIE41_RS05000at 1039.978 kb on + strand, within ABIE41_RS05000at 1039.978 kb on + strand, within ABIE41_RS05000at 1039.988 kb on + strand, within ABIE41_RS05000at 1039.990 kb on + strand, within ABIE41_RS05000at 1039.991 kb on - strand, within ABIE41_RS05000at 1040.125 kb on + strand, within ABIE41_RS05000at 1040.126 kb on - strand, within ABIE41_RS05000at 1040.200 kb on + strand, within ABIE41_RS05000at 1040.200 kb on + strand, within ABIE41_RS05000at 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.394 kb on - strandat 1040.394 kb on - strandat 1040.394 kb on - strandat 1041.291 kb on + strandat 1041.291 kb on + strandat 1041.291 kb on + strandat 1041.292 kb on - strandat 1041.292 kb on - strandat 1041.344 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,039,014 - ABIE41_RS04995 0.11 -2.8
1,039,795 + ABIE41_RS05000 0.18 -3.1
1,039,795 + ABIE41_RS05000 0.18 -1.8
1,039,796 - ABIE41_RS05000 0.18 -0.9
1,039,796 - ABIE41_RS05000 0.18 -1.8
1,039,796 - ABIE41_RS05000 0.18 -0.5
1,039,796 - ABIE41_RS05000 0.18 -3.5
1,039,867 + ABIE41_RS05000 0.28 -1.2
1,039,927 + ABIE41_RS05000 0.37 -0.9
1,039,927 + ABIE41_RS05000 0.37 -2.1
1,039,927 + ABIE41_RS05000 0.37 -0.9
1,039,927 + ABIE41_RS05000 0.37 -0.9
1,039,927 + ABIE41_RS05000 0.37 -1.1
1,039,927 + ABIE41_RS05000 0.37 -2.7
1,039,928 - ABIE41_RS05000 0.37 +1.2
1,039,928 - ABIE41_RS05000 0.37 -0.0
1,039,978 + ABIE41_RS05000 0.44 +0.6
1,039,978 + ABIE41_RS05000 0.44 +1.9
1,039,988 + ABIE41_RS05000 0.46 -1.0
1,039,990 + ABIE41_RS05000 0.46 +0.8
1,039,991 - ABIE41_RS05000 0.46 -2.1
1,040,125 + ABIE41_RS05000 0.65 -1.0
1,040,126 - ABIE41_RS05000 0.65 -2.2
1,040,200 + ABIE41_RS05000 0.76 -0.8
1,040,200 + ABIE41_RS05000 0.76 -1.6
1,040,393 + +0.3
1,040,393 + +0.3
1,040,393 + -2.0
1,040,393 + -0.4
1,040,393 + -0.4
1,040,393 + -1.4
1,040,393 + +0.3
1,040,394 - +0.5
1,040,394 - -2.0
1,040,394 - -0.9
1,041,291 + -0.3
1,041,291 + +0.6
1,041,291 + -1.6
1,041,292 - +0.5
1,041,292 - -0.6
1,041,344 + -0.7

Or see this region's nucleotide sequence