Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04820

Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04810 and ABIE41_RS04815 are separated by 174 nucleotidesABIE41_RS04815 and ABIE41_RS04820 are separated by 87 nucleotidesABIE41_RS04820 and ABIE41_RS04825 are separated by 86 nucleotidesABIE41_RS04825 and ABIE41_RS04830 are separated by 2 nucleotidesABIE41_RS04830 and ABIE41_RS04835 are separated by 9 nucleotides ABIE41_RS04810: ABIE41_RS04810 - ABC transporter ATP-binding protein, at 1,006,414 to 1,007,151 _RS04810 ABIE41_RS04815: ABIE41_RS04815 - arylesterase, at 1,007,326 to 1,007,934 _RS04815 ABIE41_RS04820: ABIE41_RS04820 - aldo/keto reductase, at 1,008,022 to 1,009,077 _RS04820 ABIE41_RS04825: ABIE41_RS04825 - RNA 2',3'-cyclic phosphodiesterase, at 1,009,164 to 1,009,742 _RS04825 ABIE41_RS04830: ABIE41_RS04830 - 4a-hydroxytetrahydrobiopterin dehydratase, at 1,009,745 to 1,010,035 _RS04830 ABIE41_RS04835: ABIE41_RS04835 - RNA pseudouridine synthase, at 1,010,045 to 1,010,704 _RS04835 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1007.085 kb on + strandat 1007.086 kb on - strandat 1007.086 kb on - strandat 1007.086 kb on - strandat 1007.086 kb on - strandat 1007.086 kb on - strandat 1007.414 kb on - strand, within ABIE41_RS04815at 1007.414 kb on - strand, within ABIE41_RS04815at 1007.652 kb on + strand, within ABIE41_RS04815at 1007.652 kb on + strand, within ABIE41_RS04815at 1007.652 kb on + strand, within ABIE41_RS04815at 1007.653 kb on - strand, within ABIE41_RS04815at 1007.653 kb on - strand, within ABIE41_RS04815at 1007.653 kb on - strand, within ABIE41_RS04815at 1007.653 kb on - strand, within ABIE41_RS04815at 1007.653 kb on - strand, within ABIE41_RS04815at 1007.698 kb on + strand, within ABIE41_RS04815at 1007.698 kb on + strand, within ABIE41_RS04815at 1007.698 kb on + strand, within ABIE41_RS04815at 1007.698 kb on + strand, within ABIE41_RS04815at 1007.698 kb on + strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.699 kb on - strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.725 kb on + strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.726 kb on - strand, within ABIE41_RS04815at 1007.749 kb on + strand, within ABIE41_RS04815at 1007.750 kb on - strand, within ABIE41_RS04815at 1007.750 kb on - strand, within ABIE41_RS04815at 1007.750 kb on - strand, within ABIE41_RS04815at 1007.750 kb on - strand, within ABIE41_RS04815at 1007.750 kb on - strand, within ABIE41_RS04815at 1007.786 kb on - strand, within ABIE41_RS04815at 1007.786 kb on - strand, within ABIE41_RS04815at 1007.893 kb on - strandat 1007.893 kb on - strandat 1008.017 kb on + strandat 1008.017 kb on + strandat 1008.018 kb on - strandat 1008.026 kb on - strandat 1008.028 kb on + strandat 1008.028 kb on + strandat 1008.029 kb on - strandat 1008.088 kb on + strandat 1008.088 kb on + strandat 1008.088 kb on + strandat 1008.089 kb on - strandat 1008.089 kb on - strandat 1008.089 kb on - strandat 1008.134 kb on - strand, within ABIE41_RS04820at 1008.134 kb on - strand, within ABIE41_RS04820at 1008.134 kb on - strand, within ABIE41_RS04820at 1008.134 kb on - strand, within ABIE41_RS04820at 1008.134 kb on - strand, within ABIE41_RS04820at 1008.178 kb on + strand, within ABIE41_RS04820at 1008.178 kb on + strand, within ABIE41_RS04820at 1008.178 kb on + strand, within ABIE41_RS04820at 1008.179 kb on - strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.397 kb on + strand, within ABIE41_RS04820at 1008.398 kb on - strand, within ABIE41_RS04820at 1008.398 kb on - strand, within ABIE41_RS04820at 1008.398 kb on - strand, within ABIE41_RS04820at 1008.398 kb on - strand, within ABIE41_RS04820at 1008.399 kb on + strand, within ABIE41_RS04820at 1008.399 kb on + strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.400 kb on - strand, within ABIE41_RS04820at 1008.410 kb on - strand, within ABIE41_RS04820at 1008.410 kb on - strand, within ABIE41_RS04820at 1008.423 kb on - strand, within ABIE41_RS04820at 1008.659 kb on - strand, within ABIE41_RS04820at 1008.733 kb on + strand, within ABIE41_RS04820at 1008.734 kb on - strand, within ABIE41_RS04820at 1008.769 kb on + strand, within ABIE41_RS04820at 1008.769 kb on + strand, within ABIE41_RS04820at 1008.769 kb on + strand, within ABIE41_RS04820at 1008.770 kb on - strand, within ABIE41_RS04820at 1008.770 kb on - strand, within ABIE41_RS04820at 1008.864 kb on + strand, within ABIE41_RS04820at 1008.865 kb on + strand, within ABIE41_RS04820at 1008.865 kb on + strand, within ABIE41_RS04820at 1008.865 kb on + strand, within ABIE41_RS04820at 1008.865 kb on + strand, within ABIE41_RS04820at 1008.865 kb on + strand, within ABIE41_RS04820at 1008.866 kb on - strand, within ABIE41_RS04820at 1008.866 kb on - strand, within ABIE41_RS04820at 1008.866 kb on - strand, within ABIE41_RS04820at 1008.866 kb on - strand, within ABIE41_RS04820at 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.078 kb on + strandat 1009.079 kb on - strandat 1009.079 kb on - strandat 1009.079 kb on - strandat 1009.079 kb on - strandat 1009.079 kb on - strandat 1009.079 kb on - strandat 1009.269 kb on + strand, within ABIE41_RS04825at 1009.269 kb on + strand, within ABIE41_RS04825at 1009.269 kb on + strand, within ABIE41_RS04825at 1009.270 kb on - strand, within ABIE41_RS04825at 1009.270 kb on - strand, within ABIE41_RS04825at 1009.353 kb on + strand, within ABIE41_RS04825at 1009.416 kb on + strand, within ABIE41_RS04825at 1009.416 kb on + strand, within ABIE41_RS04825at 1009.416 kb on + strand, within ABIE41_RS04825at 1009.416 kb on + strand, within ABIE41_RS04825at 1009.417 kb on - strand, within ABIE41_RS04825at 1009.664 kb on + strand, within ABIE41_RS04825at 1009.664 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.665 kb on + strand, within ABIE41_RS04825at 1009.666 kb on - strand, within ABIE41_RS04825at 1009.666 kb on - strand, within ABIE41_RS04825at 1009.666 kb on - strand, within ABIE41_RS04825at 1009.666 kb on - strand, within ABIE41_RS04825at 1009.666 kb on - strand, within ABIE41_RS04825at 1009.683 kb on + strand, within ABIE41_RS04825at 1009.684 kb on - strand, within ABIE41_RS04825at 1009.702 kb on - strandat 1009.840 kb on + strand, within ABIE41_RS04830at 1009.841 kb on + strand, within ABIE41_RS04830at 1009.841 kb on + strand, within ABIE41_RS04830at 1009.842 kb on - strand, within ABIE41_RS04830at 1009.842 kb on - strand, within ABIE41_RS04830at 1009.842 kb on - strand, within ABIE41_RS04830at 1009.937 kb on + strand, within ABIE41_RS04830at 1009.938 kb on - strand, within ABIE41_RS04830at 1010.033 kb on + strandat 1010.034 kb on - strandat 1010.046 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM
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1,007,085 + -0.2
1,007,086 - +0.2
1,007,086 - +0.4
1,007,086 - -0.1
1,007,086 - +0.5
1,007,086 - -0.4
1,007,414 - ABIE41_RS04815 0.14 +1.0
1,007,414 - ABIE41_RS04815 0.14 +0.0
1,007,652 + ABIE41_RS04815 0.54 +0.9
1,007,652 + ABIE41_RS04815 0.54 -1.2
1,007,652 + ABIE41_RS04815 0.54 -0.4
1,007,653 - ABIE41_RS04815 0.54 +1.1
1,007,653 - ABIE41_RS04815 0.54 -0.2
1,007,653 - ABIE41_RS04815 0.54 -0.4
1,007,653 - ABIE41_RS04815 0.54 -1.0
1,007,653 - ABIE41_RS04815 0.54 +0.0
1,007,698 + ABIE41_RS04815 0.61 -0.4
1,007,698 + ABIE41_RS04815 0.61 +1.5
1,007,698 + ABIE41_RS04815 0.61 +0.4
1,007,698 + ABIE41_RS04815 0.61 -2.0
1,007,698 + ABIE41_RS04815 0.61 -0.4
1,007,699 - ABIE41_RS04815 0.61 -0.1
1,007,699 - ABIE41_RS04815 0.61 -0.2
1,007,699 - ABIE41_RS04815 0.61 -0.1
1,007,699 - ABIE41_RS04815 0.61 +0.4
1,007,699 - ABIE41_RS04815 0.61 +1.0
1,007,699 - ABIE41_RS04815 0.61 +1.5
1,007,725 + ABIE41_RS04815 0.66 +0.3
1,007,725 + ABIE41_RS04815 0.66 +0.7
1,007,725 + ABIE41_RS04815 0.66 +0.8
1,007,725 + ABIE41_RS04815 0.66 +0.1
1,007,725 + ABIE41_RS04815 0.66 -1.5
1,007,725 + ABIE41_RS04815 0.66 -0.6
1,007,726 - ABIE41_RS04815 0.66 -0.1
1,007,726 - ABIE41_RS04815 0.66 +1.2
1,007,726 - ABIE41_RS04815 0.66 -0.1
1,007,726 - ABIE41_RS04815 0.66 -1.8
1,007,726 - ABIE41_RS04815 0.66 -0.5
1,007,726 - ABIE41_RS04815 0.66 +0.9
1,007,726 - ABIE41_RS04815 0.66 -0.3
1,007,726 - ABIE41_RS04815 0.66 -0.3
1,007,726 - ABIE41_RS04815 0.66 +1.0
1,007,749 + ABIE41_RS04815 0.69 +1.2
1,007,750 - ABIE41_RS04815 0.70 +2.6
1,007,750 - ABIE41_RS04815 0.70 +0.1
1,007,750 - ABIE41_RS04815 0.70 +1.1
1,007,750 - ABIE41_RS04815 0.70 +0.2
1,007,750 - ABIE41_RS04815 0.70 +0.7
1,007,786 - ABIE41_RS04815 0.76 -0.1
1,007,786 - ABIE41_RS04815 0.76 +0.8
1,007,893 - +0.0
1,007,893 - +0.9
1,008,017 + +0.7
1,008,017 + -0.4
1,008,018 - -0.1
1,008,026 - +0.1
1,008,028 + -1.4
1,008,028 + -0.6
1,008,029 - +0.6
1,008,088 + -0.4
1,008,088 + +0.8
1,008,088 + -0.1
1,008,089 - -0.5
1,008,089 - -0.7
1,008,089 - +2.9
1,008,134 - ABIE41_RS04820 0.11 -0.3
1,008,134 - ABIE41_RS04820 0.11 -0.3
1,008,134 - ABIE41_RS04820 0.11 -2.1
1,008,134 - ABIE41_RS04820 0.11 +1.5
1,008,134 - ABIE41_RS04820 0.11 -0.3
1,008,178 + ABIE41_RS04820 0.15 -1.8
1,008,178 + ABIE41_RS04820 0.15 +0.1
1,008,178 + ABIE41_RS04820 0.15 -1.6
1,008,179 - ABIE41_RS04820 0.15 -0.0
1,008,397 + ABIE41_RS04820 0.36 +2.5
1,008,397 + ABIE41_RS04820 0.36 +2.1
1,008,397 + ABIE41_RS04820 0.36 -1.3
1,008,397 + ABIE41_RS04820 0.36 -0.7
1,008,397 + ABIE41_RS04820 0.36 -0.4
1,008,397 + ABIE41_RS04820 0.36 -0.8
1,008,397 + ABIE41_RS04820 0.36 +0.5
1,008,398 - ABIE41_RS04820 0.36 +0.7
1,008,398 - ABIE41_RS04820 0.36 +0.3
1,008,398 - ABIE41_RS04820 0.36 +0.0
1,008,398 - ABIE41_RS04820 0.36 -0.4
1,008,399 + ABIE41_RS04820 0.36 -0.4
1,008,399 + ABIE41_RS04820 0.36 +0.3
1,008,400 - ABIE41_RS04820 0.36 -0.2
1,008,400 - ABIE41_RS04820 0.36 +1.3
1,008,400 - ABIE41_RS04820 0.36 -0.5
1,008,400 - ABIE41_RS04820 0.36 -1.3
1,008,400 - ABIE41_RS04820 0.36 -0.7
1,008,400 - ABIE41_RS04820 0.36 -0.8
1,008,410 - ABIE41_RS04820 0.37 -0.6
1,008,410 - ABIE41_RS04820 0.37 +0.3
1,008,423 - ABIE41_RS04820 0.38 -1.9
1,008,659 - ABIE41_RS04820 0.60 +0.8
1,008,733 + ABIE41_RS04820 0.67 -0.3
1,008,734 - ABIE41_RS04820 0.67 +0.3
1,008,769 + ABIE41_RS04820 0.71 +0.9
1,008,769 + ABIE41_RS04820 0.71 +0.1
1,008,769 + ABIE41_RS04820 0.71 -1.6
1,008,770 - ABIE41_RS04820 0.71 -1.2
1,008,770 - ABIE41_RS04820 0.71 -0.1
1,008,864 + ABIE41_RS04820 0.80 +0.1
1,008,865 + ABIE41_RS04820 0.80 -0.5
1,008,865 + ABIE41_RS04820 0.80 -0.6
1,008,865 + ABIE41_RS04820 0.80 +0.7
1,008,865 + ABIE41_RS04820 0.80 -1.4
1,008,865 + ABIE41_RS04820 0.80 +0.8
1,008,866 - ABIE41_RS04820 0.80 -0.4
1,008,866 - ABIE41_RS04820 0.80 +0.3
1,008,866 - ABIE41_RS04820 0.80 -0.0
1,008,866 - ABIE41_RS04820 0.80 -0.4
1,009,078 + +0.4
1,009,078 + -1.6
1,009,078 + -0.1
1,009,078 + -0.1
1,009,078 + -1.8
1,009,078 + -0.2
1,009,078 + -0.4
1,009,079 - +0.2
1,009,079 - +1.4
1,009,079 - +0.2
1,009,079 - +0.0
1,009,079 - +0.5
1,009,079 - -0.7
1,009,269 + ABIE41_RS04825 0.18 -0.7
1,009,269 + ABIE41_RS04825 0.18 -0.4
1,009,269 + ABIE41_RS04825 0.18 -0.9
1,009,270 - ABIE41_RS04825 0.18 +1.0
1,009,270 - ABIE41_RS04825 0.18 +0.3
1,009,353 + ABIE41_RS04825 0.33 -1.1
1,009,416 + ABIE41_RS04825 0.44 +1.0
1,009,416 + ABIE41_RS04825 0.44 +0.6
1,009,416 + ABIE41_RS04825 0.44 +1.8
1,009,416 + ABIE41_RS04825 0.44 +2.2
1,009,417 - ABIE41_RS04825 0.44 +1.6
1,009,664 + ABIE41_RS04825 0.86 +1.3
1,009,664 + ABIE41_RS04825 0.86 -0.2
1,009,665 + ABIE41_RS04825 0.87 -0.5
1,009,665 + ABIE41_RS04825 0.87 -0.0
1,009,665 + ABIE41_RS04825 0.87 -1.4
1,009,665 + ABIE41_RS04825 0.87 +0.1
1,009,665 + ABIE41_RS04825 0.87 -1.1
1,009,665 + ABIE41_RS04825 0.87 -0.5
1,009,665 + ABIE41_RS04825 0.87 +0.3
1,009,666 - ABIE41_RS04825 0.87 -0.5
1,009,666 - ABIE41_RS04825 0.87 +1.4
1,009,666 - ABIE41_RS04825 0.87 +0.8
1,009,666 - ABIE41_RS04825 0.87 +0.0
1,009,666 - ABIE41_RS04825 0.87 -0.4
1,009,683 + ABIE41_RS04825 0.90 +0.5
1,009,684 - ABIE41_RS04825 0.90 +1.0
1,009,702 - +0.6
1,009,840 + ABIE41_RS04830 0.33 +0.8
1,009,841 + ABIE41_RS04830 0.33 -2.1
1,009,841 + ABIE41_RS04830 0.33 -0.9
1,009,842 - ABIE41_RS04830 0.33 +1.0
1,009,842 - ABIE41_RS04830 0.33 +0.8
1,009,842 - ABIE41_RS04830 0.33 -2.4
1,009,937 + ABIE41_RS04830 0.66 +0.7
1,009,938 - ABIE41_RS04830 0.66 -2.6
1,010,033 + -0.2
1,010,034 - -0.3
1,010,046 + +0.9

Or see this region's nucleotide sequence