Experiment: R2A with 1-octen-3-ol 0.542729333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03820 and ABIE41_RS03825 are separated by 51 nucleotides ABIE41_RS03825 and ABIE41_RS03830 are separated by 81 nucleotides ABIE41_RS03830 and ABIE41_RS03835 are separated by 70 nucleotides
ABIE41_RS03820: ABIE41_RS03820 - type I pantothenate kinase, at 793,831 to 794,805
_RS03820
ABIE41_RS03825: ABIE41_RS03825 - VTT domain-containing protein, at 794,857 to 795,303
_RS03825
ABIE41_RS03830: ABIE41_RS03830 - RidA family protein, at 795,385 to 795,735
_RS03830
ABIE41_RS03835: ABIE41_RS03835 - hypothetical protein, at 795,806 to 797,197
_RS03835
Position (kb) 795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 794.803 kb on + strand at 794.803 kb on + strand at 794.803 kb on + strand at 794.804 kb on - strand at 794.804 kb on - strand at 795.204 kb on + strand, within ABIE41_RS03825 at 795.205 kb on - strand, within ABIE41_RS03825 at 795.205 kb on - strand, within ABIE41_RS03825 at 795.214 kb on + strand, within ABIE41_RS03825 at 795.214 kb on + strand, within ABIE41_RS03825 at 795.214 kb on + strand, within ABIE41_RS03825 at 795.215 kb on - strand, within ABIE41_RS03825 at 795.215 kb on - strand, within ABIE41_RS03825 at 795.215 kb on - strand, within ABIE41_RS03825 at 795.215 kb on - strand, within ABIE41_RS03825 at 795.265 kb on + strand at 795.352 kb on + strand at 795.353 kb on - strand at 795.451 kb on + strand, within ABIE41_RS03830 at 795.451 kb on + strand, within ABIE41_RS03830 at 795.452 kb on - strand, within ABIE41_RS03830 at 795.583 kb on - strand, within ABIE41_RS03830 at 795.583 kb on - strand, within ABIE41_RS03830 at 795.583 kb on - strand, within ABIE41_RS03830 at 795.583 kb on - strand, within ABIE41_RS03830 at 795.583 kb on - strand, within ABIE41_RS03830 at 795.703 kb on - strand at 795.802 kb on + strand at 795.802 kb on + strand at 795.803 kb on - strand at 795.803 kb on - strand at 796.584 kb on + strand, within ABIE41_RS03835 at 796.584 kb on + strand, within ABIE41_RS03835 at 796.585 kb on - strand, within ABIE41_RS03835 at 796.585 kb on - strand, within ABIE41_RS03835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.542729333333333 mM remove 794,803 + +0.2 794,803 + +0.7 794,803 + -0.1 794,804 - -0.2 794,804 - +0.3 795,204 + ABIE41_RS03825 0.78 +1.1 795,205 - ABIE41_RS03825 0.78 -0.2 795,205 - ABIE41_RS03825 0.78 -2.8 795,214 + ABIE41_RS03825 0.80 -0.2 795,214 + ABIE41_RS03825 0.80 +0.0 795,214 + ABIE41_RS03825 0.80 -0.3 795,215 - ABIE41_RS03825 0.80 +1.2 795,215 - ABIE41_RS03825 0.80 -0.1 795,215 - ABIE41_RS03825 0.80 -0.2 795,215 - ABIE41_RS03825 0.80 -0.7 795,265 + +0.4 795,352 + -1.5 795,353 - +1.7 795,451 + ABIE41_RS03830 0.19 -0.6 795,451 + ABIE41_RS03830 0.19 -1.1 795,452 - ABIE41_RS03830 0.19 +0.5 795,583 - ABIE41_RS03830 0.56 -0.2 795,583 - ABIE41_RS03830 0.56 -0.3 795,583 - ABIE41_RS03830 0.56 -0.4 795,583 - ABIE41_RS03830 0.56 -0.5 795,583 - ABIE41_RS03830 0.56 -0.4 795,703 - -0.6 795,802 + -0.2 795,802 + +1.4 795,803 - +0.7 795,803 - +0.5 796,584 + ABIE41_RS03835 0.56 -0.1 796,584 + ABIE41_RS03835 0.56 +0.1 796,585 - ABIE41_RS03835 0.56 -0.5 796,585 - ABIE41_RS03835 0.56 +0.3
Or see this region's nucleotide sequence