Strain Fitness in Pseudomonas sp. RS175 around PFR28_04702

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
5,361,108	-		PFR28_04700	0.70	+0.1
5,361,142	+		PFR28_04700	0.76	-0.1
5,361,142	+		PFR28_04700	0.76	-0.1
5,361,143	-		PFR28_04700	0.77	-0.3
5,361,143	-		PFR28_04700	0.77	-0.7
5,361,143	-		PFR28_04700	0.77	+0.0
5,361,205	+		PFR28_04700	0.88	+0.8
5,361,206	-		PFR28_04700	0.88	-0.2
5,361,206	-		PFR28_04700	0.88	-0.3
5,361,206	-		PFR28_04700	0.88	-0.2
5,361,206	-		PFR28_04700	0.88	+1.0
5,361,206	-		PFR28_04700	0.88	+0.3
5,361,206	-		PFR28_04700	0.88	+0.5
5,361,220	+				-0.9
5,361,220	+				+0.2
5,361,220	+				+1.2
5,361,220	+				+0.3
5,361,220	+				-2.3
5,361,220	+				-2.4
5,361,220	+				-0.4
5,361,221	-				-0.8
5,361,221	-				+1.1
5,361,221	-				+0.3
5,361,221	-				-1.2
5,361,221	-				-0.7
5,361,221	-				-1.2
5,361,221	-				-0.7
5,361,224	+				-0.7
5,361,224	+				+0.0
5,361,224	+				-1.2
5,361,224	+				-1.1
5,361,224	+				+0.6
5,361,224	+				+0.2
5,361,225	-				-0.5
5,361,225	-				+0.2
5,361,256	+				-0.1
5,361,257	-				+0.3
5,361,349	+				-1.7
5,361,359	+				+0.2
5,361,360	-				-0.5
5,361,514	+		PFR28_04701	0.26	+0.4
5,361,514	+		PFR28_04701	0.26	+1.4
5,361,514	+		PFR28_04701	0.26	+0.6
5,361,514	+		PFR28_04701	0.26	+0.6
5,361,514	+		PFR28_04701	0.26	-0.8
5,361,514	+		PFR28_04701	0.26	-1.0
5,361,514	+		PFR28_04701	0.26	+1.2
5,361,514	+		PFR28_04701	0.26	+0.1
5,361,515	-		PFR28_04701	0.26	+0.1
5,361,515	-		PFR28_04701	0.26	-3.2
5,361,515	-		PFR28_04701	0.26	+0.2
5,361,515	-		PFR28_04701	0.26	-0.3
5,361,515	-		PFR28_04701	0.26	+0.7
5,361,515	-		PFR28_04701	0.26	-0.3
5,361,515	-		PFR28_04701	0.26	-1.6
5,361,515	-		PFR28_04701	0.26	+0.1
5,361,515	-		PFR28_04701	0.26	-1.0
5,361,556	+		PFR28_04701	0.33	+0.1
5,361,556	+		PFR28_04701	0.33	-2.2
5,361,556	+		PFR28_04701	0.33	+0.1
5,361,557	-		PFR28_04701	0.33	+0.2
5,361,587	-		PFR28_04701	0.37	+0.1
5,361,621	-		PFR28_04701	0.43	+0.7
5,361,655	+		PFR28_04701	0.48	-2.7
5,361,655	+		PFR28_04701	0.48	+0.8
5,361,655	+		PFR28_04701	0.48	-0.5
5,361,655	+		PFR28_04701	0.48	+0.1
5,361,655	+		PFR28_04701	0.48	+0.7
5,361,656	-		PFR28_04701	0.48	-1.7
5,361,656	-		PFR28_04701	0.48	-0.2
5,361,656	-		PFR28_04701	0.48	-0.7
5,361,656	-		PFR28_04701	0.48	+0.4
5,361,656	-		PFR28_04701	0.48	-2.2
5,361,656	-		PFR28_04701	0.48	-0.8
5,361,656	-		PFR28_04701	0.48	-0.8
5,361,663	+		PFR28_04701	0.49	-0.4
5,361,736	+		PFR28_04701	0.60	-0.8
5,361,736	+		PFR28_04701	0.60	-2.3
5,361,736	+		PFR28_04701	0.60	-1.8
5,361,736	+		PFR28_04701	0.60	-0.9
5,361,737	-		PFR28_04701	0.61	-0.3
5,361,737	-		PFR28_04701	0.61	-1.9
5,361,737	-		PFR28_04701	0.61	+1.7
5,361,737	-		PFR28_04701	0.61	+0.8
5,361,768	+		PFR28_04701	0.65	+0.5
5,361,768	+		PFR28_04701	0.65	+0.5
5,361,768	+		PFR28_04701	0.65	-0.6
5,361,768	+		PFR28_04701	0.65	+0.7
5,361,769	-		PFR28_04701	0.65	+0.8
5,361,769	-		PFR28_04701	0.65	+0.3
5,361,769	-		PFR28_04701	0.65	-0.6
5,361,822	+		PFR28_04701	0.74	-0.3
5,362,136	+				-1.1
5,362,136	+				-1.4
5,362,137	-				+0.8
5,362,137	-				-1.7
5,362,137	-				-0.2
5,362,184	+		PFR28_04702	0.15	+1.0
5,362,184	+		PFR28_04702	0.15	+1.4
5,362,185	-		PFR28_04702	0.15	+0.2
5,362,185	-		PFR28_04702	0.15	-1.0
5,362,233	+		PFR28_04702	0.23	-0.4
5,362,244	+		PFR28_04702	0.25	+0.1
5,362,244	+		PFR28_04702	0.25	-0.3
5,362,244	+		PFR28_04702	0.25	+0.8
5,362,245	-		PFR28_04702	0.25	+0.4
5,362,245	-		PFR28_04702	0.25	+0.0
5,362,251	+		PFR28_04702	0.26	+0.8
5,362,251	+		PFR28_04702	0.26	+0.1
5,362,267	+		PFR28_04702	0.28	+1.1
5,362,267	+		PFR28_04702	0.28	+0.3
5,362,268	-		PFR28_04702	0.29	+0.1
5,362,279	+		PFR28_04702	0.30	-1.0
5,362,279	+		PFR28_04702	0.30	-0.1
5,362,279	+		PFR28_04702	0.30	+1.5
5,362,280	-		PFR28_04702	0.31	-0.5
5,362,280	-		PFR28_04702	0.31	-0.2
5,362,280	-		PFR28_04702	0.31	-1.0
5,362,280	-		PFR28_04702	0.31	+0.6
5,362,287	+		PFR28_04702	0.32	-3.1
5,362,287	+		PFR28_04702	0.32	+0.2
5,362,287	+		PFR28_04702	0.32	-0.9
5,362,287	+		PFR28_04702	0.32	+1.6
5,362,287	+		PFR28_04702	0.32	-0.7
5,362,287	+		PFR28_04702	0.32	-0.6
5,362,287	+		PFR28_04702	0.32	+0.0
5,362,288	-		PFR28_04702	0.32	-2.6
5,362,288	-		PFR28_04702	0.32	-1.2
5,362,302	+		PFR28_04702	0.34	+0.3
5,362,390	+		PFR28_04702	0.49	-0.3
5,362,391	-		PFR28_04702	0.49	+0.6
5,362,391	-		PFR28_04702	0.49	-0.9
5,362,391	-		PFR28_04702	0.49	-0.9
5,362,391	-		PFR28_04702	0.49	-1.5
5,362,403	+		PFR28_04702	0.51	-2.2
5,362,403	+		PFR28_04702	0.51	-1.7
5,362,403	+		PFR28_04702	0.51	-2.6
5,362,403	+		PFR28_04702	0.51	-0.2
5,362,403	+		PFR28_04702	0.51	+1.4
5,362,403	+		PFR28_04702	0.51	-0.5
5,362,404	-		PFR28_04702	0.51	-0.6
5,362,404	-		PFR28_04702	0.51	+1.0
5,362,404	-		PFR28_04702	0.51	-1.3
5,362,404	-		PFR28_04702	0.51	+2.0
5,362,404	-		PFR28_04702	0.51	-0.8
5,362,404	-		PFR28_04702	0.51	+0.8
5,362,404	-		PFR28_04702	0.51	+1.2
5,362,404	-		PFR28_04702	0.51	-1.0
5,362,404	-		PFR28_04702	0.51	-0.2
5,362,404	-		PFR28_04702	0.51	+1.2
5,362,457	+		PFR28_04702	0.59	-0.4
5,362,457	+		PFR28_04702	0.59	+0.8
5,362,457	+		PFR28_04702	0.59	+1.2
5,362,457	+		PFR28_04702	0.59	+0.3
5,362,457	+		PFR28_04702	0.59	-0.3
5,362,458	-		PFR28_04702	0.60	+0.2
5,362,458	-		PFR28_04702	0.60	-0.0
5,362,458	-		PFR28_04702	0.60	-0.8
5,362,458	-		PFR28_04702	0.60	+2.4
5,362,524	+		PFR28_04702	0.70	+0.3
5,362,524	+		PFR28_04702	0.70	-1.2
5,362,525	-		PFR28_04702	0.71	+2.8
5,362,525	-		PFR28_04702	0.71	-0.4
5,362,541	+		PFR28_04702	0.73	+1.1
5,362,541	+		PFR28_04702	0.73	+2.7
5,362,541	+		PFR28_04702	0.73	+0.5
5,362,541	+		PFR28_04702	0.73	+0.9
5,362,541	+		PFR28_04702	0.73	-0.4
5,362,541	+		PFR28_04702	0.73	-0.6
5,362,542	-		PFR28_04702	0.73	-1.0
5,362,542	-		PFR28_04702	0.73	-0.2
5,362,542	-		PFR28_04702	0.73	+1.8
5,362,542	-		PFR28_04702	0.73	-0.2
5,362,542	-		PFR28_04702	0.73	-2.3
5,362,542	-		PFR28_04702	0.73	-1.2
5,362,542	-		PFR28_04702	0.73	+2.7
5,362,542	-		PFR28_04702	0.73	-0.7
5,362,542	-		PFR28_04702	0.73	-0.5
5,362,542	-		PFR28_04702	0.73	+0.9
5,362,587	+		PFR28_04702	0.81	-1.7
5,362,602	+		PFR28_04702	0.83	+0.0
5,362,603	-		PFR28_04702	0.83	-1.4
5,362,705	-				-0.3
5,362,732	+				-0.1
5,362,732	+				-2.7
5,362,732	+				-0.0
5,362,732	+				-0.8
5,362,733	-				+0.7
5,362,733	-				+1.4
5,362,733	-				-0.2
5,362,733	-				+0.3
5,362,738	+				+2.2
5,362,738	+				-0.0
5,362,738	+				-0.3
5,362,738	+				+0.2
5,362,738	+				+0.6
5,362,739	-				+0.3
5,362,739	-				-0.7
5,362,739	-				-3.6
5,362,739	-				-0.9
5,362,739	-				-0.0
5,362,739	-				-2.3
5,362,837	+				+1.5
5,362,838	-				+1.6
5,362,838	-				-0.5
5,362,851	+				+0.9
5,362,851	+				-0.0
5,362,851	+				-2.9
5,362,851	+				-1.5
5,362,852	-				-1.0
5,362,861	+				-0.3
5,362,914	-		PFR28_04703	0.17	+1.0
5,362,914	-		PFR28_04703	0.17	-2.6
5,362,924	+		PFR28_04703	0.20	-2.4
5,362,924	+		PFR28_04703	0.20	+0.7
5,362,925	-		PFR28_04703	0.20	+0.9
5,363,013	+		PFR28_04703	0.40	+0.1
5,363,014	-		PFR28_04703	0.40	+0.7
5,363,120	+		PFR28_04703	0.64	-0.6
5,363,121	-		PFR28_04703	0.64	+0.3
5,363,134	+		PFR28_04703	0.67	+0.7
5,363,134	+		PFR28_04703	0.67	-0.3
5,363,212	+		PFR28_04703	0.85	+0.6
5,363,212	+		PFR28_04703	0.85	-0.1
5,363,213	-		PFR28_04703	0.85	+0.8
5,363,213	-		PFR28_04703	0.85	+3.3
5,363,242	+				-1.6
5,363,276	+				-0.0
5,363,276	+				-1.7
5,363,276	+				+0.4
5,363,277	-				+0.1
5,363,277	-				-1.6
5,363,341	+				+0.2
5,363,341	+				+1.6
5,363,341	+				+0.2
5,363,341	+				-2.2
5,363,341	+				-2.2
5,363,341	+				-0.1
5,363,342	-				+0.1
5,363,342	-				+0.6
5,363,342	-				+0.6
5,363,342	-				+0.8
5,363,342	-				+0.4
5,363,342	-				+0.5
5,363,342	-				+0.4
5,363,342	-				+1.6
5,363,417	+				+0.2
5,363,417	+				-0.4
5,363,417	+				-0.7
5,363,417	+				+0.6
5,363,417	+				-1.4
5,363,424	+				+0.5
5,363,424	+				+0.2
5,363,424	+				+1.4
5,363,425	-				+0.3
5,363,455	-				-0.4
5,363,561	+		PFR28_04704	0.12	-0.1
5,363,561	+		PFR28_04704	0.12	+0.3
5,363,561	+		PFR28_04704	0.12	+0.5
5,363,561	+		PFR28_04704	0.12	+0.8
5,363,562	-		PFR28_04704	0.13	-0.0
5,363,562	-		PFR28_04704	0.13	+0.6
5,363,562	-		PFR28_04704	0.13	+0.6
5,363,562	-		PFR28_04704	0.13	+0.8
5,363,572	+		PFR28_04704	0.15	-0.0
5,363,572	+		PFR28_04704	0.15	+0.1
5,363,572	+		PFR28_04704	0.15	+1.1
5,363,572	+		PFR28_04704	0.15	+1.8
5,363,572	+		PFR28_04704	0.15	-0.0
5,363,572	+		PFR28_04704	0.15	-0.6
5,363,573	-		PFR28_04704	0.16	+1.8
5,363,573	-		PFR28_04704	0.16	-0.3
5,363,573	-		PFR28_04704	0.16	-0.5
5,363,573	-		PFR28_04704	0.16	-3.1
5,363,573	-		PFR28_04704	0.16	+1.0
5,363,584	+		PFR28_04704	0.19	-0.7
5,363,584	+		PFR28_04704	0.19	-1.4
5,363,584	+		PFR28_04704	0.19	-0.9
5,363,632	+		PFR28_04704	0.32	-0.2
5,363,695	-		PFR28_04704	0.49	-4.0
5,363,695	-		PFR28_04704	0.49	-1.0