Strain Fitness in Pseudomonas sp. RS175 around PFR28_01595

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01593 and PFR28_01594 overlap by 4 nucleotidesPFR28_01594 and PFR28_01595 are separated by 9 nucleotidesPFR28_01595 and PFR28_01596 are separated by 274 nucleotides PFR28_01593: PFR28_01593 - hypothetical protein, at 1,765,348 to 1,765,842 _01593 PFR28_01594: PFR28_01594 - hypothetical protein, at 1,765,839 to 1,766,783 _01594 PFR28_01595: PFR28_01595 - hypothetical protein, at 1,766,793 to 1,767,752 _01595 PFR28_01596: PFR28_01596 - Glyoxylate/hydroxypyruvate reductase B, at 1,768,027 to 1,769,004 _01596 Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1765.836 kb on + strandat 1765.837 kb on - strandat 1766.347 kb on + strand, within PFR28_01594at 1766.354 kb on + strand, within PFR28_01594at 1766.354 kb on + strand, within PFR28_01594at 1766.354 kb on + strand, within PFR28_01594at 1766.354 kb on + strand, within PFR28_01594at 1766.355 kb on - strand, within PFR28_01594at 1766.603 kb on - strand, within PFR28_01594at 1766.778 kb on - strandat 1767.079 kb on + strand, within PFR28_01595at 1767.079 kb on + strand, within PFR28_01595at 1767.079 kb on + strand, within PFR28_01595at 1767.080 kb on - strand, within PFR28_01595at 1767.080 kb on - strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.103 kb on + strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.104 kb on - strand, within PFR28_01595at 1767.220 kb on - strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.352 kb on + strand, within PFR28_01595at 1767.353 kb on - strand, within PFR28_01595at 1767.353 kb on - strand, within PFR28_01595at 1767.506 kb on - strand, within PFR28_01595at 1767.506 kb on - strand, within PFR28_01595at 1767.506 kb on - strand, within PFR28_01595at 1767.579 kb on - strand, within PFR28_01595at 1767.815 kb on - strandat 1767.815 kb on - strandat 1767.819 kb on + strandat 1767.925 kb on + strandat 1768.303 kb on - strand, within PFR28_01596at 1768.484 kb on + strand, within PFR28_01596at 1768.484 kb on + strand, within PFR28_01596at 1768.484 kb on + strand, within PFR28_01596at 1768.485 kb on - strand, within PFR28_01596at 1768.485 kb on - strand, within PFR28_01596at 1768.557 kb on + strand, within PFR28_01596

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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1,765,836 + +0.2
1,765,837 - -0.0
1,766,347 + PFR28_01594 0.54 -2.3
1,766,354 + PFR28_01594 0.54 -1.4
1,766,354 + PFR28_01594 0.54 +1.1
1,766,354 + PFR28_01594 0.54 -1.4
1,766,354 + PFR28_01594 0.54 -2.4
1,766,355 - PFR28_01594 0.55 -0.9
1,766,603 - PFR28_01594 0.81 -0.8
1,766,778 - -1.1
1,767,079 + PFR28_01595 0.30 -1.7
1,767,079 + PFR28_01595 0.30 +0.2
1,767,079 + PFR28_01595 0.30 -2.3
1,767,080 - PFR28_01595 0.30 -0.5
1,767,080 - PFR28_01595 0.30 -2.0
1,767,103 + PFR28_01595 0.32 -0.1
1,767,103 + PFR28_01595 0.32 -0.0
1,767,103 + PFR28_01595 0.32 +0.8
1,767,103 + PFR28_01595 0.32 -2.4
1,767,103 + PFR28_01595 0.32 -1.5
1,767,103 + PFR28_01595 0.32 -0.1
1,767,103 + PFR28_01595 0.32 -1.7
1,767,103 + PFR28_01595 0.32 -2.3
1,767,104 - PFR28_01595 0.32 -0.1
1,767,104 - PFR28_01595 0.32 +1.9
1,767,104 - PFR28_01595 0.32 +1.2
1,767,104 - PFR28_01595 0.32 +0.2
1,767,104 - PFR28_01595 0.32 -1.1
1,767,104 - PFR28_01595 0.32 +0.7
1,767,104 - PFR28_01595 0.32 +0.8
1,767,220 - PFR28_01595 0.44 -2.6
1,767,352 + PFR28_01595 0.58 -0.9
1,767,352 + PFR28_01595 0.58 -1.4
1,767,352 + PFR28_01595 0.58 -0.1
1,767,352 + PFR28_01595 0.58 +1.0
1,767,352 + PFR28_01595 0.58 -0.8
1,767,352 + PFR28_01595 0.58 -0.1
1,767,352 + PFR28_01595 0.58 -4.2
1,767,352 + PFR28_01595 0.58 +0.7
1,767,353 - PFR28_01595 0.58 -1.1
1,767,353 - PFR28_01595 0.58 +0.5
1,767,506 - PFR28_01595 0.74 -2.3
1,767,506 - PFR28_01595 0.74 +0.0
1,767,506 - PFR28_01595 0.74 +0.6
1,767,579 - PFR28_01595 0.82 -2.1
1,767,815 - -0.3
1,767,815 - -1.0
1,767,819 + +1.0
1,767,925 + -0.3
1,768,303 - PFR28_01596 0.28 -0.5
1,768,484 + PFR28_01596 0.47 -0.7
1,768,484 + PFR28_01596 0.47 -0.8
1,768,484 + PFR28_01596 0.47 -1.4
1,768,485 - PFR28_01596 0.47 +0.3
1,768,485 - PFR28_01596 0.47 -0.4
1,768,557 + PFR28_01596 0.54 +0.7

Or see this region's nucleotide sequence