Strain Fitness in Pseudomonas sp. RS175 around PFR28_00572

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00571 and PFR28_00572 are separated by 146 nucleotidesPFR28_00572 and PFR28_00573 are separated by 187 nucleotides PFR28_00571: PFR28_00571 - Putative glucose-6-phosphate 1-epimerase, at 612,626 to 613,480 _00571 PFR28_00572: PFR28_00572 - HTH-type transcriptional regulator HexR, at 613,627 to 614,496 _00572 PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 Position (kb) 613 614 615Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 612.872 kb on + strand, within PFR28_00571at 612.873 kb on - strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.987 kb on + strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 612.988 kb on - strand, within PFR28_00571at 613.106 kb on + strand, within PFR28_00571at 613.114 kb on + strand, within PFR28_00571at 613.115 kb on - strand, within PFR28_00571at 613.134 kb on + strand, within PFR28_00571at 613.135 kb on - strand, within PFR28_00571at 613.166 kb on + strand, within PFR28_00571at 613.166 kb on + strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.167 kb on - strand, within PFR28_00571at 613.318 kb on + strand, within PFR28_00571at 613.609 kb on + strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.610 kb on - strandat 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.970 kb on - strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.476 kb on + strandat 614.476 kb on + strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.497 kb on - strandat 614.497 kb on - strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.547 kb on - strandat 614.551 kb on + strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.588 kb on - strandat 614.609 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.615 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.228 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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612,872 + PFR28_00571 0.29 +2.3
612,873 - PFR28_00571 0.29 +0.4
612,987 + PFR28_00571 0.42 +0.2
612,987 + PFR28_00571 0.42 +2.4
612,987 + PFR28_00571 0.42 +2.1
612,987 + PFR28_00571 0.42 +0.8
612,988 - PFR28_00571 0.42 -0.5
612,988 - PFR28_00571 0.42 +0.3
612,988 - PFR28_00571 0.42 +0.9
612,988 - PFR28_00571 0.42 -1.1
613,106 + PFR28_00571 0.56 -0.0
613,114 + PFR28_00571 0.57 +0.4
613,115 - PFR28_00571 0.57 -3.0
613,134 + PFR28_00571 0.59 +1.0
613,135 - PFR28_00571 0.60 -1.7
613,166 + PFR28_00571 0.63 +0.9
613,166 + PFR28_00571 0.63 +1.8
613,167 - PFR28_00571 0.63 +0.9
613,167 - PFR28_00571 0.63 -0.6
613,167 - PFR28_00571 0.63 -1.3
613,318 + PFR28_00571 0.81 +0.2
613,609 + -0.2
613,610 - +0.6
613,610 - -0.2
613,610 - +3.1
613,610 - -0.1
613,784 + PFR28_00572 0.18 -0.8
613,784 + PFR28_00572 0.18 -4.7
613,784 + PFR28_00572 0.18 -0.3
613,784 + PFR28_00572 0.18 -0.9
613,784 + PFR28_00572 0.18 +2.0
613,784 + PFR28_00572 0.18 -3.0
613,784 + PFR28_00572 0.18 -0.6
613,784 + PFR28_00572 0.18 -1.0
613,784 + PFR28_00572 0.18 -3.5
613,784 + PFR28_00572 0.18 -2.3
613,784 + PFR28_00572 0.18 -1.5
613,784 + PFR28_00572 0.18 -1.0
613,785 - PFR28_00572 0.18 -3.5
613,785 - PFR28_00572 0.18 -3.2
613,785 - PFR28_00572 0.18 -1.7
613,785 - PFR28_00572 0.18 -2.7
613,785 - PFR28_00572 0.18 -4.9
613,785 - PFR28_00572 0.18 -1.4
613,785 - PFR28_00572 0.18 -1.7
613,785 - PFR28_00572 0.18 -1.6
613,785 - PFR28_00572 0.18 -2.2
613,785 - PFR28_00572 0.18 -0.5
613,785 - PFR28_00572 0.18 -2.9
613,785 - PFR28_00572 0.18 -2.9
613,785 - PFR28_00572 0.18 -2.0
613,970 - PFR28_00572 0.39 -3.0
614,204 + PFR28_00572 0.66 -2.0
614,204 + PFR28_00572 0.66 -3.7
614,204 + PFR28_00572 0.66 -0.5
614,204 + PFR28_00572 0.66 -1.2
614,205 - PFR28_00572 0.66 -1.3
614,205 - PFR28_00572 0.66 -3.5
614,246 + PFR28_00572 0.71 +0.6
614,246 + PFR28_00572 0.71 -1.8
614,246 + PFR28_00572 0.71 +1.4
614,246 + PFR28_00572 0.71 -3.3
614,246 + PFR28_00572 0.71 -0.9
614,246 + PFR28_00572 0.71 -1.0
614,246 + PFR28_00572 0.71 +0.2
614,247 - PFR28_00572 0.71 +1.5
614,247 - PFR28_00572 0.71 -4.3
614,476 + -0.5
614,476 + -3.3
614,477 - +0.2
614,477 - -0.4
614,477 - -4.7
614,497 - +0.3
614,497 - -0.3
614,507 + +0.3
614,507 + +1.5
614,507 + -2.1
614,507 + +0.7
614,546 + -2.0
614,546 + +0.6
614,546 + -1.4
614,547 - -0.6
614,551 + +0.2
614,552 - -2.1
614,552 - -0.5
614,552 - -0.7
614,588 - -1.4
614,609 + +1.5
614,612 + +1.7
614,612 + -0.5
614,612 + +1.8
614,612 + -1.1
614,612 + +1.6
614,612 + +1.2
614,613 - -2.3
614,613 - -0.5
614,613 - -1.9
614,613 - -1.0
614,613 - -0.4
614,613 - -0.8
614,613 - -1.8
614,613 - +0.2
614,615 + +0.9
614,668 + -0.5
614,668 + +0.8
614,668 + -0.3
614,668 + +0.5
614,978 + PFR28_00573 0.20 -4.2
614,978 + PFR28_00573 0.20 -1.9
614,978 + PFR28_00573 0.20 -3.3
614,978 + PFR28_00573 0.20 -3.2
615,050 + PFR28_00573 0.25 -1.5
615,050 + PFR28_00573 0.25 -2.0
615,050 + PFR28_00573 0.25 -3.6
615,050 + PFR28_00573 0.25 -3.0
615,153 + PFR28_00573 0.32 -3.5
615,153 + PFR28_00573 0.32 -2.9
615,194 + PFR28_00573 0.35 -4.5
615,194 + PFR28_00573 0.35 -3.8
615,194 + PFR28_00573 0.35 -2.3
615,194 + PFR28_00573 0.35 -1.4
615,194 + PFR28_00573 0.35 -1.7
615,228 + PFR28_00573 0.37 -2.9
615,290 + PFR28_00573 0.41 +0.1
615,290 + PFR28_00573 0.41 -0.5
615,290 + PFR28_00573 0.41 -1.3
615,290 + PFR28_00573 0.41 -3.0
615,290 + PFR28_00573 0.41 -2.0
615,290 + PFR28_00573 0.41 -0.5
615,290 + PFR28_00573 0.41 -4.3
615,290 + PFR28_00573 0.41 -3.4
615,290 + PFR28_00573 0.41 -1.3
615,290 + PFR28_00573 0.41 -1.8
615,290 + PFR28_00573 0.41 -1.2
615,290 + PFR28_00573 0.41 -0.1
615,290 + PFR28_00573 0.41 -2.0
615,290 + PFR28_00573 0.41 -1.1
615,405 + PFR28_00573 0.49 -4.2
615,405 + PFR28_00573 0.49 -2.4
615,405 + PFR28_00573 0.49 -1.8

Or see this region's nucleotide sequence