Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00404 and PFR28_00405 are separated by 45 nucleotides PFR28_00405 and PFR28_00406 are separated by 3 nucleotides PFR28_00406 and PFR28_00407 are separated by 107 nucleotides PFR28_00407 and PFR28_00408 overlap by 4 nucleotides
PFR28_00404: PFR28_00404 - Outer membrane protein assembly factor BamA, at 441,913 to 444,288
_00404
PFR28_00405: PFR28_00405 - hypothetical protein, at 444,334 to 444,837
_00405
PFR28_00406: PFR28_00406 - UDP-3-O-acylglucosamine N-acyltransferase, at 444,841 to 445,896
_00406
PFR28_00407: PFR28_00407 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 446,004 to 446,444
_00407
PFR28_00408: PFR28_00408 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 446,441 to 447,217
_00408
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 444.286 kb on + strand at 444.286 kb on + strand at 444.286 kb on + strand at 444.286 kb on + strand at 444.286 kb on + strand at 444.304 kb on + strand at 444.304 kb on + strand at 444.304 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.328 kb on + strand at 444.371 kb on + strand at 444.421 kb on + strand, within PFR28_00405 at 444.460 kb on + strand, within PFR28_00405 at 444.460 kb on + strand, within PFR28_00405 at 444.460 kb on + strand, within PFR28_00405 at 444.790 kb on + strand at 444.790 kb on + strand at 445.897 kb on + strand at 445.984 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 444,286 + +0.3 444,286 + -2.0 444,286 + +4.2 444,286 + -0.5 444,286 + -1.5 444,304 + -0.8 444,304 + +1.5 444,304 + -1.6 444,328 + +2.1 444,328 + -0.5 444,328 + -1.0 444,328 + +0.6 444,328 + -1.3 444,328 + +1.5 444,328 + -1.6 444,328 + -0.5 444,328 + +0.1 444,328 + +1.4 444,328 + -1.9 444,328 + +1.5 444,328 + +1.7 444,328 + +0.5 444,328 + -1.8 444,328 + +1.5 444,328 + +0.4 444,328 + +1.1 444,328 + -0.8 444,371 + +2.1 444,421 + PFR28_00405 0.17 +3.9 444,460 + PFR28_00405 0.25 -0.0 444,460 + PFR28_00405 0.25 +4.2 444,460 + PFR28_00405 0.25 +0.4 444,790 + +1.0 444,790 + +1.5 445,897 + +0.7 445,984 + -3.4
Or see this region's nucleotide sequence