Strain Fitness in Pseudomonas sp. RS175 around PFR28_00379

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00378 and PFR28_00379 are separated by 5 nucleotidesPFR28_00379 and PFR28_00380 are separated by 133 nucleotidesPFR28_00380 and PFR28_00381 are separated by 31 nucleotides PFR28_00378: PFR28_00378 - Multidrug resistance protein MdtA, at 411,875 to 412,975 _00378 PFR28_00379: PFR28_00379 - Cobalt-zinc-cadmium resistance protein CzcA, at 412,981 to 416,046 _00379 PFR28_00380: PFR28_00380 - hypothetical protein, at 416,180 to 416,869 _00380 PFR28_00381: PFR28_00381 - hypothetical protein, at 416,901 to 417,299 _00381 Position (kb) 412 413 414 415 416 417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 412.019 kb on + strand, within PFR28_00378at 412.020 kb on - strand, within PFR28_00378at 412.080 kb on + strand, within PFR28_00378at 412.080 kb on + strand, within PFR28_00378at 412.080 kb on + strand, within PFR28_00378at 412.081 kb on - strand, within PFR28_00378at 412.081 kb on - strand, within PFR28_00378at 412.081 kb on - strand, within PFR28_00378at 412.081 kb on - strand, within PFR28_00378at 412.238 kb on + strand, within PFR28_00378at 412.239 kb on - strand, within PFR28_00378at 412.239 kb on - strand, within PFR28_00378at 412.370 kb on + strand, within PFR28_00378at 412.371 kb on - strand, within PFR28_00378at 412.371 kb on - strand, within PFR28_00378at 412.371 kb on - strand, within PFR28_00378at 412.554 kb on + strand, within PFR28_00378at 412.555 kb on - strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.769 kb on + strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.770 kb on - strand, within PFR28_00378at 412.924 kb on - strandat 413.027 kb on + strandat 413.028 kb on - strandat 413.028 kb on - strandat 413.028 kb on - strandat 413.338 kb on - strand, within PFR28_00379at 413.409 kb on + strand, within PFR28_00379at 413.409 kb on + strand, within PFR28_00379at 413.409 kb on + strand, within PFR28_00379at 413.409 kb on + strand, within PFR28_00379at 413.410 kb on - strand, within PFR28_00379at 413.410 kb on - strand, within PFR28_00379at 413.413 kb on + strand, within PFR28_00379at 413.413 kb on + strand, within PFR28_00379at 413.413 kb on + strand, within PFR28_00379at 413.440 kb on + strand, within PFR28_00379at 413.440 kb on + strand, within PFR28_00379at 413.441 kb on - strand, within PFR28_00379at 413.458 kb on + strand, within PFR28_00379at 413.459 kb on - strand, within PFR28_00379at 413.561 kb on + strand, within PFR28_00379at 413.561 kb on + strand, within PFR28_00379at 413.562 kb on - strand, within PFR28_00379at 413.673 kb on - strand, within PFR28_00379at 413.739 kb on + strand, within PFR28_00379at 413.740 kb on - strand, within PFR28_00379at 413.740 kb on - strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.115 kb on + strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.116 kb on - strand, within PFR28_00379at 414.118 kb on + strand, within PFR28_00379at 414.119 kb on - strand, within PFR28_00379at 414.119 kb on - strand, within PFR28_00379at 414.259 kb on + strand, within PFR28_00379at 414.259 kb on + strand, within PFR28_00379at 414.259 kb on + strand, within PFR28_00379at 414.260 kb on - strand, within PFR28_00379at 414.260 kb on - strand, within PFR28_00379at 414.260 kb on - strand, within PFR28_00379at 414.260 kb on - strand, within PFR28_00379at 414.260 kb on - strand, within PFR28_00379at 414.359 kb on - strand, within PFR28_00379at 414.359 kb on - strand, within PFR28_00379at 414.360 kb on + strand, within PFR28_00379at 414.360 kb on + strand, within PFR28_00379at 414.361 kb on - strand, within PFR28_00379at 414.361 kb on - strand, within PFR28_00379at 414.361 kb on - strand, within PFR28_00379at 414.361 kb on - strand, within PFR28_00379at 414.361 kb on - strand, within PFR28_00379at 414.433 kb on + strand, within PFR28_00379at 414.433 kb on + strand, within PFR28_00379at 414.529 kb on + strand, within PFR28_00379at 414.574 kb on - strand, within PFR28_00379at 414.775 kb on - strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.778 kb on + strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.779 kb on - strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.787 kb on + strand, within PFR28_00379at 414.788 kb on - strand, within PFR28_00379at 414.788 kb on - strand, within PFR28_00379at 414.788 kb on - strand, within PFR28_00379at 414.788 kb on - strand, within PFR28_00379at 415.079 kb on - strand, within PFR28_00379at 415.079 kb on - strand, within PFR28_00379at 415.126 kb on + strand, within PFR28_00379at 415.126 kb on + strand, within PFR28_00379at 415.229 kb on - strand, within PFR28_00379at 415.321 kb on - strand, within PFR28_00379at 415.321 kb on - strand, within PFR28_00379at 415.369 kb on + strand, within PFR28_00379at 415.369 kb on + strand, within PFR28_00379at 415.438 kb on + strand, within PFR28_00379at 415.438 kb on + strand, within PFR28_00379at 415.520 kb on - strand, within PFR28_00379at 415.540 kb on - strand, within PFR28_00379at 415.749 kb on + strandat 415.776 kb on + strandat 415.776 kb on + strandat 415.777 kb on - strandat 415.777 kb on - strandat 415.777 kb on - strandat 416.014 kb on + strandat 416.014 kb on + strandat 416.015 kb on - strandat 416.105 kb on + strandat 416.105 kb on + strandat 416.105 kb on + strandat 416.105 kb on + strandat 416.106 kb on - strandat 416.106 kb on - strandat 416.169 kb on + strandat 416.169 kb on + strandat 416.169 kb on + strandat 416.301 kb on + strand, within PFR28_00380at 416.301 kb on + strand, within PFR28_00380at 416.301 kb on + strand, within PFR28_00380at 416.301 kb on + strand, within PFR28_00380at 416.301 kb on + strand, within PFR28_00380at 416.302 kb on - strand, within PFR28_00380at 416.302 kb on - strand, within PFR28_00380at 416.302 kb on - strand, within PFR28_00380at 416.333 kb on + strand, within PFR28_00380at 416.333 kb on + strand, within PFR28_00380at 416.333 kb on + strand, within PFR28_00380at 416.334 kb on - strand, within PFR28_00380at 416.334 kb on - strand, within PFR28_00380at 416.334 kb on - strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.370 kb on + strand, within PFR28_00380at 416.371 kb on - strand, within PFR28_00380at 416.371 kb on - strand, within PFR28_00380at 416.461 kb on - strand, within PFR28_00380at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.963 kb on + strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381at 416.964 kb on - strand, within PFR28_00381

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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412,019 + PFR28_00378 0.13 +0.7
412,020 - PFR28_00378 0.13 +1.1
412,080 + PFR28_00378 0.19 +0.5
412,080 + PFR28_00378 0.19 +3.0
412,080 + PFR28_00378 0.19 -0.5
412,081 - PFR28_00378 0.19 -2.9
412,081 - PFR28_00378 0.19 -2.0
412,081 - PFR28_00378 0.19 -0.0
412,081 - PFR28_00378 0.19 +0.0
412,238 + PFR28_00378 0.33 -0.2
412,239 - PFR28_00378 0.33 +1.8
412,239 - PFR28_00378 0.33 -0.3
412,370 + PFR28_00378 0.45 -0.3
412,371 - PFR28_00378 0.45 +1.0
412,371 - PFR28_00378 0.45 +1.2
412,371 - PFR28_00378 0.45 -0.7
412,554 + PFR28_00378 0.62 -1.1
412,555 - PFR28_00378 0.62 +0.3
412,769 + PFR28_00378 0.81 -0.8
412,769 + PFR28_00378 0.81 -1.4
412,769 + PFR28_00378 0.81 +0.1
412,769 + PFR28_00378 0.81 -0.4
412,769 + PFR28_00378 0.81 -0.2
412,769 + PFR28_00378 0.81 -0.6
412,769 + PFR28_00378 0.81 -0.7
412,769 + PFR28_00378 0.81 -1.4
412,769 + PFR28_00378 0.81 -1.6
412,769 + PFR28_00378 0.81 +0.6
412,769 + PFR28_00378 0.81 +0.4
412,769 + PFR28_00378 0.81 +1.4
412,770 - PFR28_00378 0.81 +1.9
412,770 - PFR28_00378 0.81 -1.2
412,770 - PFR28_00378 0.81 +1.0
412,770 - PFR28_00378 0.81 -2.0
412,770 - PFR28_00378 0.81 +0.3
412,770 - PFR28_00378 0.81 +0.6
412,770 - PFR28_00378 0.81 -0.4
412,770 - PFR28_00378 0.81 -0.8
412,770 - PFR28_00378 0.81 -2.8
412,770 - PFR28_00378 0.81 +0.9
412,770 - PFR28_00378 0.81 +1.5
412,770 - PFR28_00378 0.81 +0.4
412,770 - PFR28_00378 0.81 +0.2
412,770 - PFR28_00378 0.81 +0.5
412,770 - PFR28_00378 0.81 -0.3
412,770 - PFR28_00378 0.81 -1.9
412,770 - PFR28_00378 0.81 +0.3
412,770 - PFR28_00378 0.81 -0.5
412,924 - -0.8
413,027 + -1.0
413,028 - +0.3
413,028 - -2.0
413,028 - -3.6
413,338 - PFR28_00379 0.12 -1.4
413,409 + PFR28_00379 0.14 +0.7
413,409 + PFR28_00379 0.14 +0.2
413,409 + PFR28_00379 0.14 +0.5
413,409 + PFR28_00379 0.14 -0.3
413,410 - PFR28_00379 0.14 -0.4
413,410 - PFR28_00379 0.14 -0.5
413,413 + PFR28_00379 0.14 +0.4
413,413 + PFR28_00379 0.14 -0.3
413,413 + PFR28_00379 0.14 +1.6
413,440 + PFR28_00379 0.15 +1.3
413,440 + PFR28_00379 0.15 -0.3
413,441 - PFR28_00379 0.15 +0.2
413,458 + PFR28_00379 0.16 -0.0
413,459 - PFR28_00379 0.16 -1.2
413,561 + PFR28_00379 0.19 +1.1
413,561 + PFR28_00379 0.19 -0.3
413,562 - PFR28_00379 0.19 -1.3
413,673 - PFR28_00379 0.23 -1.9
413,739 + PFR28_00379 0.25 -2.4
413,740 - PFR28_00379 0.25 +1.0
413,740 - PFR28_00379 0.25 -0.5
414,115 + PFR28_00379 0.37 -2.5
414,115 + PFR28_00379 0.37 +1.0
414,115 + PFR28_00379 0.37 -0.0
414,115 + PFR28_00379 0.37 -0.4
414,115 + PFR28_00379 0.37 -0.3
414,115 + PFR28_00379 0.37 -0.3
414,115 + PFR28_00379 0.37 +0.5
414,115 + PFR28_00379 0.37 +0.9
414,116 - PFR28_00379 0.37 -0.0
414,116 - PFR28_00379 0.37 -0.8
414,116 - PFR28_00379 0.37 -1.1
414,116 - PFR28_00379 0.37 -0.3
414,116 - PFR28_00379 0.37 -0.3
414,116 - PFR28_00379 0.37 +0.5
414,116 - PFR28_00379 0.37 +0.1
414,116 - PFR28_00379 0.37 -1.0
414,116 - PFR28_00379 0.37 -0.0
414,116 - PFR28_00379 0.37 -2.0
414,116 - PFR28_00379 0.37 +1.2
414,116 - PFR28_00379 0.37 -1.0
414,116 - PFR28_00379 0.37 -2.2
414,116 - PFR28_00379 0.37 +0.3
414,116 - PFR28_00379 0.37 -0.1
414,116 - PFR28_00379 0.37 +0.8
414,118 + PFR28_00379 0.37 +0.2
414,119 - PFR28_00379 0.37 +1.6
414,119 - PFR28_00379 0.37 -0.4
414,259 + PFR28_00379 0.42 +1.3
414,259 + PFR28_00379 0.42 +0.3
414,259 + PFR28_00379 0.42 +0.4
414,260 - PFR28_00379 0.42 -3.8
414,260 - PFR28_00379 0.42 +0.9
414,260 - PFR28_00379 0.42 -0.6
414,260 - PFR28_00379 0.42 +0.3
414,260 - PFR28_00379 0.42 +0.9
414,359 - PFR28_00379 0.45 +0.4
414,359 - PFR28_00379 0.45 -0.6
414,360 + PFR28_00379 0.45 -1.2
414,360 + PFR28_00379 0.45 -2.2
414,361 - PFR28_00379 0.45 +0.3
414,361 - PFR28_00379 0.45 -1.3
414,361 - PFR28_00379 0.45 -1.3
414,361 - PFR28_00379 0.45 -0.3
414,361 - PFR28_00379 0.45 +0.3
414,433 + PFR28_00379 0.47 -0.8
414,433 + PFR28_00379 0.47 +0.3
414,529 + PFR28_00379 0.50 -0.2
414,574 - PFR28_00379 0.52 +1.0
414,775 - PFR28_00379 0.59 +1.0
414,778 + PFR28_00379 0.59 +0.1
414,778 + PFR28_00379 0.59 +1.4
414,778 + PFR28_00379 0.59 -0.5
414,778 + PFR28_00379 0.59 +0.5
414,778 + PFR28_00379 0.59 +1.5
414,778 + PFR28_00379 0.59 -0.2
414,778 + PFR28_00379 0.59 -2.1
414,778 + PFR28_00379 0.59 -0.0
414,778 + PFR28_00379 0.59 -0.8
414,778 + PFR28_00379 0.59 +0.1
414,779 - PFR28_00379 0.59 -0.9
414,779 - PFR28_00379 0.59 -1.5
414,779 - PFR28_00379 0.59 -0.4
414,779 - PFR28_00379 0.59 -0.6
414,779 - PFR28_00379 0.59 -3.4
414,779 - PFR28_00379 0.59 +0.1
414,779 - PFR28_00379 0.59 +0.8
414,779 - PFR28_00379 0.59 -2.9
414,779 - PFR28_00379 0.59 +0.9
414,779 - PFR28_00379 0.59 +1.2
414,787 + PFR28_00379 0.59 -0.7
414,787 + PFR28_00379 0.59 -1.0
414,787 + PFR28_00379 0.59 -0.9
414,787 + PFR28_00379 0.59 -0.3
414,787 + PFR28_00379 0.59 +0.7
414,787 + PFR28_00379 0.59 -1.2
414,788 - PFR28_00379 0.59 +0.2
414,788 - PFR28_00379 0.59 +0.0
414,788 - PFR28_00379 0.59 -1.0
414,788 - PFR28_00379 0.59 +2.4
415,079 - PFR28_00379 0.68 -1.9
415,079 - PFR28_00379 0.68 +0.2
415,126 + PFR28_00379 0.70 +0.7
415,126 + PFR28_00379 0.70 +1.5
415,229 - PFR28_00379 0.73 -0.5
415,321 - PFR28_00379 0.76 +0.1
415,321 - PFR28_00379 0.76 +0.6
415,369 + PFR28_00379 0.78 +0.0
415,369 + PFR28_00379 0.78 +0.8
415,438 + PFR28_00379 0.80 -3.7
415,438 + PFR28_00379 0.80 +0.9
415,520 - PFR28_00379 0.83 -0.3
415,540 - PFR28_00379 0.83 -2.0
415,749 + -0.1
415,776 + +0.3
415,776 + -2.5
415,777 - -2.7
415,777 - +0.4
415,777 - -0.5
416,014 + +0.4
416,014 + +1.1
416,015 - -0.0
416,105 + -0.5
416,105 + -2.3
416,105 + -0.4
416,105 + +0.1
416,106 - +0.4
416,106 - +1.4
416,169 + +0.4
416,169 + -1.0
416,169 + +0.4
416,301 + PFR28_00380 0.18 -0.5
416,301 + PFR28_00380 0.18 -0.4
416,301 + PFR28_00380 0.18 -2.4
416,301 + PFR28_00380 0.18 +0.5
416,301 + PFR28_00380 0.18 +0.8
416,302 - PFR28_00380 0.18 -0.5
416,302 - PFR28_00380 0.18 +0.1
416,302 - PFR28_00380 0.18 -0.1
416,333 + PFR28_00380 0.22 -0.1
416,333 + PFR28_00380 0.22 +0.8
416,333 + PFR28_00380 0.22 -0.3
416,334 - PFR28_00380 0.22 -1.0
416,334 - PFR28_00380 0.22 +0.0
416,334 - PFR28_00380 0.22 +0.6
416,370 + PFR28_00380 0.28 +0.8
416,370 + PFR28_00380 0.28 -0.4
416,370 + PFR28_00380 0.28 -0.8
416,370 + PFR28_00380 0.28 -2.7
416,370 + PFR28_00380 0.28 +0.4
416,370 + PFR28_00380 0.28 -0.8
416,370 + PFR28_00380 0.28 -1.2
416,371 - PFR28_00380 0.28 -1.9
416,371 - PFR28_00380 0.28 -1.3
416,461 - PFR28_00380 0.41 +0.0
416,963 + PFR28_00381 0.16 -0.4
416,963 + PFR28_00381 0.16 -1.2
416,963 + PFR28_00381 0.16 -0.1
416,963 + PFR28_00381 0.16 -0.3
416,963 + PFR28_00381 0.16 -0.3
416,963 + PFR28_00381 0.16 -0.1
416,963 + PFR28_00381 0.16 +0.2
416,963 + PFR28_00381 0.16 -3.0
416,964 - PFR28_00381 0.16 +0.1
416,964 - PFR28_00381 0.16 -0.1
416,964 - PFR28_00381 0.16 +1.1
416,964 - PFR28_00381 0.16 -0.8
416,964 - PFR28_00381 0.16 +0.6
416,964 - PFR28_00381 0.16 -3.4
416,964 - PFR28_00381 0.16 -1.4
416,964 - PFR28_00381 0.16 +0.3
416,964 - PFR28_00381 0.16 +0.2
416,964 - PFR28_00381 0.16 +0.3
416,964 - PFR28_00381 0.16 -1.0

Or see this region's nucleotide sequence