Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08335

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08325 and ABIE41_RS08330 are separated by 200 nucleotidesABIE41_RS08330 and ABIE41_RS08335 are separated by 229 nucleotidesABIE41_RS08335 and ABIE41_RS08340 are separated by 799 nucleotides ABIE41_RS08325: ABIE41_RS08325 - sugar ABC transporter permease, at 1,719,206 to 1,720,051 _RS08325 ABIE41_RS08330: ABIE41_RS08330 - N-acetyltransferase, at 1,720,252 to 1,720,788 _RS08330 ABIE41_RS08335: ABIE41_RS08335 - type III PLP-dependent enzyme, at 1,721,018 to 1,722,163 _RS08335 ABIE41_RS08340: ABIE41_RS08340 - glucan biosynthesis protein G, at 1,722,963 to 1,724,549 _RS08340 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -1 0 1at 1720.191 kb on + strandat 1720.247 kb on + strandat 1720.247 kb on + strandat 1720.442 kb on + strand, within ABIE41_RS08330at 1720.442 kb on + strand, within ABIE41_RS08330at 1720.443 kb on - strand, within ABIE41_RS08330at 1720.443 kb on - strand, within ABIE41_RS08330at 1722.397 kb on - strandat 1722.621 kb on - strandat 1722.621 kb on - strandat 1722.621 kb on - strandat 1722.622 kb on - strandat 1722.673 kb on + strandat 1722.674 kb on - strandat 1722.674 kb on - strandat 1722.674 kb on - strandat 1722.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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1,720,191 + -0.0
1,720,247 + +0.5
1,720,247 + -0.1
1,720,442 + ABIE41_RS08330 0.35 +0.1
1,720,442 + ABIE41_RS08330 0.35 -0.6
1,720,443 - ABIE41_RS08330 0.36 -0.3
1,720,443 - ABIE41_RS08330 0.36 -0.1
1,722,397 - -1.4
1,722,621 - -1.2
1,722,621 - -0.3
1,722,621 - -0.4
1,722,622 - -0.5
1,722,673 + -0.1
1,722,674 - -0.0
1,722,674 - +0.6
1,722,674 - +1.5
1,722,899 + -0.4

Or see this region's nucleotide sequence