Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19590 and ABIE41_RS19595 are separated by 120 nucleotides ABIE41_RS19595 and ABIE41_RS19600 are separated by 40 nucleotides
ABIE41_RS19590: ABIE41_RS19590 - DUF2303 family protein, at 4,030,857 to 4,031,840
_RS19590
ABIE41_RS19595: ABIE41_RS19595 - DNA polymerase III subunit beta, at 4,031,961 to 4,033,073
_RS19595
ABIE41_RS19600: ABIE41_RS19600 - DUF5131 family protein, at 4,033,114 to 4,034,265
_RS19600
Position (kb)
4031
4032
4033
4034 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4031.263 kb on - strand, within ABIE41_RS19590 at 4031.263 kb on - strand, within ABIE41_RS19590 at 4031.311 kb on - strand, within ABIE41_RS19590 at 4031.311 kb on - strand, within ABIE41_RS19590 at 4031.449 kb on - strand, within ABIE41_RS19590 at 4031.740 kb on - strand, within ABIE41_RS19590 at 4032.112 kb on + strand, within ABIE41_RS19595 at 4032.415 kb on - strand, within ABIE41_RS19595 at 4032.415 kb on - strand, within ABIE41_RS19595 at 4032.415 kb on - strand, within ABIE41_RS19595 at 4032.418 kb on - strand, within ABIE41_RS19595 at 4032.418 kb on - strand, within ABIE41_RS19595 at 4032.418 kb on - strand, within ABIE41_RS19595 at 4032.418 kb on - strand, within ABIE41_RS19595 at 4032.418 kb on - strand, within ABIE41_RS19595 at 4032.900 kb on + strand, within ABIE41_RS19595 at 4032.901 kb on - strand, within ABIE41_RS19595 at 4033.312 kb on + strand, within ABIE41_RS19600 at 4033.390 kb on - strand, within ABIE41_RS19600 at 4033.719 kb on + strand, within ABIE41_RS19600 at 4033.720 kb on - strand, within ABIE41_RS19600 at 4033.720 kb on - strand, within ABIE41_RS19600 at 4033.720 kb on - strand, within ABIE41_RS19600 at 4033.812 kb on - strand, within ABIE41_RS19600 at 4033.812 kb on - strand, within ABIE41_RS19600 at 4033.812 kb on - strand, within ABIE41_RS19600 at 4033.812 kb on - strand, within ABIE41_RS19600 at 4034.053 kb on + strand, within ABIE41_RS19600 at 4034.054 kb on - strand, within ABIE41_RS19600 at 4034.054 kb on - strand, within ABIE41_RS19600 at 4034.054 kb on - strand, within ABIE41_RS19600 at 4034.054 kb on - strand, within ABIE41_RS19600 at 4034.059 kb on + strand, within ABIE41_RS19600 at 4034.060 kb on - strand, within ABIE41_RS19600 at 4034.060 kb on - strand, within ABIE41_RS19600 at 4034.060 kb on - strand, within ABIE41_RS19600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,031,263 - ABIE41_RS19590 0.41 -4.0 4,031,263 - ABIE41_RS19590 0.41 +0.5 4,031,311 - ABIE41_RS19590 0.46 -0.5 4,031,311 - ABIE41_RS19590 0.46 +3.3 4,031,449 - ABIE41_RS19590 0.60 +0.4 4,031,740 - ABIE41_RS19590 0.90 +0.8 4,032,112 + ABIE41_RS19595 0.14 +1.9 4,032,415 - ABIE41_RS19595 0.41 -0.5 4,032,415 - ABIE41_RS19595 0.41 -0.4 4,032,415 - ABIE41_RS19595 0.41 +1.3 4,032,418 - ABIE41_RS19595 0.41 +0.2 4,032,418 - ABIE41_RS19595 0.41 +0.7 4,032,418 - ABIE41_RS19595 0.41 +0.1 4,032,418 - ABIE41_RS19595 0.41 +0.1 4,032,418 - ABIE41_RS19595 0.41 +4.5 4,032,900 + ABIE41_RS19595 0.84 -0.3 4,032,901 - ABIE41_RS19595 0.84 +0.6 4,033,312 + ABIE41_RS19600 0.17 +0.0 4,033,390 - ABIE41_RS19600 0.24 +1.0 4,033,719 + ABIE41_RS19600 0.53 -0.3 4,033,720 - ABIE41_RS19600 0.53 +1.4 4,033,720 - ABIE41_RS19600 0.53 -0.2 4,033,720 - ABIE41_RS19600 0.53 -0.7 4,033,812 - ABIE41_RS19600 0.61 +0.1 4,033,812 - ABIE41_RS19600 0.61 +0.0 4,033,812 - ABIE41_RS19600 0.61 -0.3 4,033,812 - ABIE41_RS19600 0.61 -0.9 4,034,053 + ABIE41_RS19600 0.82 +1.9 4,034,054 - ABIE41_RS19600 0.82 -0.4 4,034,054 - ABIE41_RS19600 0.82 +1.1 4,034,054 - ABIE41_RS19600 0.82 +0.4 4,034,054 - ABIE41_RS19600 0.82 -1.2 4,034,059 + ABIE41_RS19600 0.82 -2.1 4,034,060 - ABIE41_RS19600 0.82 +1.5 4,034,060 - ABIE41_RS19600 0.82 -0.6 4,034,060 - ABIE41_RS19600 0.82 -0.2
Or see this region's nucleotide sequence