Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10585

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS10575 and ABIE41_RS10580 are separated by 98 nucleotidesABIE41_RS10580 and ABIE41_RS10585 are separated by 32 nucleotidesABIE41_RS10585 and ABIE41_RS10590 overlap by 4 nucleotidesABIE41_RS10590 and ABIE41_RS10595 overlap by 4 nucleotides ABIE41_RS10575: ABIE41_RS10575 - gamma-glutamyltransferase, at 2,181,439 to 2,183,115 _RS10575 ABIE41_RS10580: ABIE41_RS10580 - creatininase family protein, at 2,183,214 to 2,184,041 _RS10580 ABIE41_RS10585: ABIE41_RS10585 - ABC transporter permease, at 2,184,074 to 2,184,895 _RS10585 ABIE41_RS10590: ABIE41_RS10590 - ABC transporter permease, at 2,184,892 to 2,185,848 _RS10590 ABIE41_RS10595: ABIE41_RS10595 - ABC transporter substrate-binding protein, at 2,185,845 to 2,187,377 _RS10595 Position (kb) 2184 2185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2183.341 kb on + strand, within ABIE41_RS10580at 2183.341 kb on + strand, within ABIE41_RS10580at 2183.342 kb on - strand, within ABIE41_RS10580at 2183.342 kb on - strand, within ABIE41_RS10580at 2183.353 kb on + strand, within ABIE41_RS10580at 2183.599 kb on + strand, within ABIE41_RS10580at 2183.599 kb on + strand, within ABIE41_RS10580at 2184.011 kb on + strandat 2184.366 kb on + strand, within ABIE41_RS10585at 2184.465 kb on + strand, within ABIE41_RS10585at 2184.465 kb on + strand, within ABIE41_RS10585at 2184.465 kb on + strand, within ABIE41_RS10585at 2184.465 kb on + strand, within ABIE41_RS10585at 2184.466 kb on - strand, within ABIE41_RS10585at 2184.466 kb on - strand, within ABIE41_RS10585at 2184.466 kb on - strand, within ABIE41_RS10585at 2185.061 kb on + strand, within ABIE41_RS10590at 2185.061 kb on + strand, within ABIE41_RS10590at 2185.062 kb on - strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.202 kb on + strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.203 kb on - strand, within ABIE41_RS10590at 2185.644 kb on - strand, within ABIE41_RS10590at 2185.644 kb on - strand, within ABIE41_RS10590at 2185.644 kb on - strand, within ABIE41_RS10590at 2185.855 kb on + strandat 2185.855 kb on + strandat 2185.856 kb on - strandat 2185.856 kb on - strandat 2185.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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2,183,341 + ABIE41_RS10580 0.15 -0.8
2,183,341 + ABIE41_RS10580 0.15 -1.3
2,183,342 - ABIE41_RS10580 0.15 -2.2
2,183,342 - ABIE41_RS10580 0.15 -0.2
2,183,353 + ABIE41_RS10580 0.17 +1.8
2,183,599 + ABIE41_RS10580 0.46 +0.6
2,183,599 + ABIE41_RS10580 0.46 -1.2
2,184,011 + -0.5
2,184,366 + ABIE41_RS10585 0.36 -0.6
2,184,465 + ABIE41_RS10585 0.48 -0.7
2,184,465 + ABIE41_RS10585 0.48 -0.7
2,184,465 + ABIE41_RS10585 0.48 -1.9
2,184,465 + ABIE41_RS10585 0.48 +0.5
2,184,466 - ABIE41_RS10585 0.48 -2.2
2,184,466 - ABIE41_RS10585 0.48 -0.5
2,184,466 - ABIE41_RS10585 0.48 -0.2
2,185,061 + ABIE41_RS10590 0.18 -0.1
2,185,061 + ABIE41_RS10590 0.18 -1.6
2,185,062 - ABIE41_RS10590 0.18 -2.8
2,185,202 + ABIE41_RS10590 0.32 +0.4
2,185,202 + ABIE41_RS10590 0.32 -0.4
2,185,202 + ABIE41_RS10590 0.32 +1.6
2,185,202 + ABIE41_RS10590 0.32 -0.2
2,185,202 + ABIE41_RS10590 0.32 +3.6
2,185,202 + ABIE41_RS10590 0.32 -0.3
2,185,203 - ABIE41_RS10590 0.32 +0.7
2,185,203 - ABIE41_RS10590 0.32 +0.1
2,185,203 - ABIE41_RS10590 0.32 -0.0
2,185,203 - ABIE41_RS10590 0.32 +2.0
2,185,203 - ABIE41_RS10590 0.32 -0.6
2,185,203 - ABIE41_RS10590 0.32 -0.1
2,185,644 - ABIE41_RS10590 0.79 +0.4
2,185,644 - ABIE41_RS10590 0.79 -2.1
2,185,644 - ABIE41_RS10590 0.79 -0.5
2,185,855 + -0.0
2,185,855 + -0.2
2,185,856 - +0.9
2,185,856 - +0.4
2,185,856 - -0.3

Or see this region's nucleotide sequence