Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05400

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05395 and ABIE41_RS05400 are separated by 169 nucleotidesABIE41_RS05400 and ABIE41_RS05405 are separated by 32 nucleotides ABIE41_RS05395: ABIE41_RS05395 - flagellin, at 1,117,749 to 1,119,002 _RS05395 ABIE41_RS05400: ABIE41_RS05400 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 1,119,172 to 1,120,236 _RS05400 ABIE41_RS05405: ABIE41_RS05405 - flagellar motor switch protein FliG, at 1,120,269 to 1,121,330 _RS05405 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1118.480 kb on - strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.575 kb on + strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395at 1118.576 kb on - strand, within ABIE41_RS05395at 1118.768 kb on + strand, within ABIE41_RS05395at 1118.769 kb on - strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.770 kb on + strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.771 kb on - strand, within ABIE41_RS05395at 1118.867 kb on - strand, within ABIE41_RS05395at 1119.129 kb on + strandat 1119.129 kb on + strandat 1119.130 kb on - strandat 1119.191 kb on + strandat 1119.191 kb on + strandat 1119.224 kb on + strandat 1119.224 kb on + strandat 1119.224 kb on + strandat 1119.225 kb on - strandat 1119.398 kb on + strand, within ABIE41_RS05400at 1119.398 kb on + strand, within ABIE41_RS05400at 1119.398 kb on + strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.399 kb on - strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.416 kb on + strand, within ABIE41_RS05400at 1119.417 kb on - strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400at 1119.983 kb on + strand, within ABIE41_RS05400at 1120.279 kb on + strandat 1120.279 kb on + strandat 1120.280 kb on - strandat 1120.280 kb on - strandat 1120.735 kb on + strand, within ABIE41_RS05405at 1120.735 kb on + strand, within ABIE41_RS05405at 1120.735 kb on + strand, within ABIE41_RS05405at 1120.735 kb on + strand, within ABIE41_RS05405at 1120.736 kb on - strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.879 kb on + strand, within ABIE41_RS05405at 1120.880 kb on - strand, within ABIE41_RS05405at 1120.880 kb on - strand, within ABIE41_RS05405at 1120.912 kb on + strand, within ABIE41_RS05405at 1120.913 kb on - strand, within ABIE41_RS05405

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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1,118,480 - ABIE41_RS05395 0.58 +0.9
1,118,575 + ABIE41_RS05395 0.66 +0.9
1,118,575 + ABIE41_RS05395 0.66 -1.7
1,118,575 + ABIE41_RS05395 0.66 -0.1
1,118,575 + ABIE41_RS05395 0.66 -0.2
1,118,575 + ABIE41_RS05395 0.66 -0.8
1,118,576 - ABIE41_RS05395 0.66 +1.2
1,118,576 - ABIE41_RS05395 0.66 -1.0
1,118,768 + ABIE41_RS05395 0.81 +0.3
1,118,769 - ABIE41_RS05395 0.81 -0.1
1,118,770 + ABIE41_RS05395 0.81 -0.3
1,118,770 + ABIE41_RS05395 0.81 -1.3
1,118,770 + ABIE41_RS05395 0.81 +0.0
1,118,770 + ABIE41_RS05395 0.81 +0.3
1,118,770 + ABIE41_RS05395 0.81 -0.0
1,118,770 + ABIE41_RS05395 0.81 +0.7
1,118,770 + ABIE41_RS05395 0.81 -0.1
1,118,770 + ABIE41_RS05395 0.81 +0.4
1,118,770 + ABIE41_RS05395 0.81 -1.0
1,118,770 + ABIE41_RS05395 0.81 +1.0
1,118,771 - ABIE41_RS05395 0.81 -1.3
1,118,771 - ABIE41_RS05395 0.81 +0.4
1,118,771 - ABIE41_RS05395 0.81 -0.4
1,118,771 - ABIE41_RS05395 0.81 -2.0
1,118,771 - ABIE41_RS05395 0.81 +0.5
1,118,771 - ABIE41_RS05395 0.81 +0.2
1,118,771 - ABIE41_RS05395 0.81 -0.8
1,118,771 - ABIE41_RS05395 0.81 +0.2
1,118,771 - ABIE41_RS05395 0.81 +0.3
1,118,771 - ABIE41_RS05395 0.81 +0.4
1,118,771 - ABIE41_RS05395 0.81 -0.5
1,118,771 - ABIE41_RS05395 0.81 -0.2
1,118,867 - ABIE41_RS05395 0.89 +0.4
1,119,129 + +1.5
1,119,129 + -0.2
1,119,130 - +0.0
1,119,191 + -0.3
1,119,191 + -1.6
1,119,224 + +1.0
1,119,224 + -2.2
1,119,224 + -0.9
1,119,225 - +1.7
1,119,398 + ABIE41_RS05400 0.21 +2.9
1,119,398 + ABIE41_RS05400 0.21 -0.6
1,119,398 + ABIE41_RS05400 0.21 -3.5
1,119,399 - ABIE41_RS05400 0.21 +0.6
1,119,399 - ABIE41_RS05400 0.21 -1.2
1,119,399 - ABIE41_RS05400 0.21 -2.3
1,119,399 - ABIE41_RS05400 0.21 -0.6
1,119,399 - ABIE41_RS05400 0.21 +0.7
1,119,399 - ABIE41_RS05400 0.21 -0.0
1,119,399 - ABIE41_RS05400 0.21 +0.5
1,119,399 - ABIE41_RS05400 0.21 +0.2
1,119,416 + ABIE41_RS05400 0.23 -1.5
1,119,416 + ABIE41_RS05400 0.23 +2.2
1,119,416 + ABIE41_RS05400 0.23 -1.1
1,119,417 - ABIE41_RS05400 0.23 -0.3
1,119,983 + ABIE41_RS05400 0.76 +0.4
1,119,983 + ABIE41_RS05400 0.76 +0.7
1,119,983 + ABIE41_RS05400 0.76 -0.0
1,120,279 + -0.6
1,120,279 + +2.4
1,120,280 - -2.0
1,120,280 - -0.1
1,120,735 + ABIE41_RS05405 0.44 +0.4
1,120,735 + ABIE41_RS05405 0.44 +0.7
1,120,735 + ABIE41_RS05405 0.44 -1.6
1,120,735 + ABIE41_RS05405 0.44 +1.1
1,120,736 - ABIE41_RS05405 0.44 +0.2
1,120,879 + ABIE41_RS05405 0.57 +1.4
1,120,879 + ABIE41_RS05405 0.57 -0.1
1,120,879 + ABIE41_RS05405 0.57 -1.4
1,120,879 + ABIE41_RS05405 0.57 +0.7
1,120,879 + ABIE41_RS05405 0.57 +0.5
1,120,879 + ABIE41_RS05405 0.57 +0.7
1,120,879 + ABIE41_RS05405 0.57 -0.2
1,120,879 + ABIE41_RS05405 0.57 +0.7
1,120,879 + ABIE41_RS05405 0.57 +0.1
1,120,879 + ABIE41_RS05405 0.57 +0.9
1,120,880 - ABIE41_RS05405 0.58 +0.2
1,120,880 - ABIE41_RS05405 0.58 -0.6
1,120,912 + ABIE41_RS05405 0.61 -0.8
1,120,913 - ABIE41_RS05405 0.61 +0.8

Or see this region's nucleotide sequence