Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05385

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05380 and ABIE41_RS05385 are separated by 29 nucleotidesABIE41_RS05385 and ABIE41_RS05390 overlap by 4 nucleotides ABIE41_RS05380: ABIE41_RS05380 - MotB family protein, at 1,114,034 to 1,115,269 _RS05380 ABIE41_RS05385: ABIE41_RS05385 - hypothetical protein, at 1,115,299 to 1,115,964 _RS05385 ABIE41_RS05390: ABIE41_RS05390 - flagellar basal-body MS-ring/collar protein FliF, at 1,115,961 to 1,117,586 _RS05390 Position (kb) 1115 1116Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1114.885 kb on - strand, within ABIE41_RS05380at 1115.085 kb on + strand, within ABIE41_RS05380at 1115.086 kb on - strand, within ABIE41_RS05380at 1115.798 kb on + strand, within ABIE41_RS05385at 1116.532 kb on + strand, within ABIE41_RS05390at 1116.533 kb on - strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.574 kb on + strand, within ABIE41_RS05390at 1116.575 kb on - strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.788 kb on + strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.789 kb on - strand, within ABIE41_RS05390at 1116.833 kb on - strand, within ABIE41_RS05390

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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1,114,885 - ABIE41_RS05380 0.69 +0.0
1,115,085 + ABIE41_RS05380 0.85 +0.0
1,115,086 - ABIE41_RS05380 0.85 -0.8
1,115,798 + ABIE41_RS05385 0.75 -1.8
1,116,532 + ABIE41_RS05390 0.35 +3.0
1,116,533 - ABIE41_RS05390 0.35 -1.6
1,116,574 + ABIE41_RS05390 0.38 -0.3
1,116,574 + ABIE41_RS05390 0.38 +0.1
1,116,574 + ABIE41_RS05390 0.38 +2.2
1,116,575 - ABIE41_RS05390 0.38 -1.0
1,116,788 + ABIE41_RS05390 0.51 -0.7
1,116,788 + ABIE41_RS05390 0.51 +0.4
1,116,788 + ABIE41_RS05390 0.51 -0.1
1,116,789 - ABIE41_RS05390 0.51 +1.2
1,116,789 - ABIE41_RS05390 0.51 +1.7
1,116,833 - ABIE41_RS05390 0.54 +0.2

Or see this region's nucleotide sequence