Strain Fitness in Pseudomonas sp. RS175 around PFR28_02505

Experiment: trans-aconitic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C)
2,976,754	+				+0.3
2,976,755	-				-0.3
2,976,771	-				+1.2
2,976,823	+				-0.8
2,976,858	+				-0.4
2,976,882	+				-0.1
2,976,999	-		PFR28_02504	0.14	+0.5
2,977,347	+		PFR28_02504	0.64	-1.1
2,977,347	+		PFR28_02504	0.64	+0.4
2,977,348	-		PFR28_02504	0.64	-1.9
2,977,348	-		PFR28_02504	0.64	-0.3
2,977,348	-		PFR28_02504	0.64	-0.8
2,977,457	+		PFR28_02504	0.79	-1.1
2,977,457	+		PFR28_02504	0.79	+0.2
2,977,457	+		PFR28_02504	0.79	-1.6
2,977,458	-		PFR28_02504	0.79	+0.2
2,977,458	-		PFR28_02504	0.79	-2.6
2,977,458	-		PFR28_02504	0.79	-1.4
2,977,598	+				-0.1
2,977,598	+				-0.2
2,977,598	+				-0.1
2,977,599	-				+1.2
2,977,599	-				+1.5
2,977,763	+		PFR28_02505	0.33	-0.3
2,977,763	+		PFR28_02505	0.33	-0.6
2,977,763	+		PFR28_02505	0.33	+0.3
2,977,764	-		PFR28_02505	0.34	+0.8
2,977,764	-		PFR28_02505	0.34	-0.3
2,977,764	-		PFR28_02505	0.34	-0.3
2,977,871	+		PFR28_02505	0.54	+1.2
2,977,871	+		PFR28_02505	0.54	+0.1
2,977,871	+		PFR28_02505	0.54	+0.0
2,977,871	+		PFR28_02505	0.54	+2.2
2,977,871	+		PFR28_02505	0.54	-0.8
2,977,872	-		PFR28_02505	0.54	+0.1
2,977,872	-		PFR28_02505	0.54	-2.9
2,977,872	-		PFR28_02505	0.54	+1.3
2,977,872	-		PFR28_02505	0.54	-0.1
2,977,872	-		PFR28_02505	0.54	+0.2
2,977,872	-		PFR28_02505	0.54	+0.6
2,977,872	-		PFR28_02505	0.54	-0.2
2,978,137	+				+0.3
2,978,137	+				-2.4
2,978,138	-				-1.6
2,978,138	-				-1.9
2,978,138	-				-0.2
2,978,161	+				-0.3
2,978,181	+				+2.4
2,978,181	+				+0.3
2,978,181	+				+0.2
2,978,181	+				-0.9
2,978,181	+				-0.7
2,978,181	+				-1.8
2,978,182	-				-0.7
2,978,182	-				+2.1
2,978,182	-				+0.8
2,978,182	-				+0.3
2,978,182	-				-1.4
2,978,182	-				-1.1
2,978,182	-				-1.3
2,978,182	-				+0.2
2,978,182	-				+0.6
2,978,185	+				-0.5
2,978,185	+				+2.7
2,978,185	+				+0.4
2,978,186	-				+1.3
2,978,186	-				-0.9
2,978,186	-				+0.9
2,978,186	-				-0.3
2,978,287	+				+1.1
2,978,288	-				-1.4
2,978,352	+				-0.4
2,978,352	+				+0.1
2,978,352	+				-0.2
2,978,352	+				-0.0
2,978,352	+				-1.4
2,978,352	+				-0.4
2,978,352	+				-1.6
2,978,352	+				+1.3
2,978,352	+				-2.1
2,978,352	+				-0.4
2,978,352	+				-0.6
2,978,352	+				-0.6
2,978,352	+				+0.9
2,978,352	+				+0.3
2,978,352	+				-0.5
2,978,352	+				-2.1
2,978,352	+				-0.8
2,978,352	+				-0.2
2,978,353	-				-1.4
2,978,353	-				+0.5
2,978,353	-				+0.5
2,978,353	-				-0.9
2,978,353	-				+0.6
2,978,353	-				+0.3
2,978,353	-				-0.1
2,978,353	-				-1.9
2,978,353	-				+0.3
2,978,353	-				+0.2
2,978,353	-				-1.8
2,978,353	-				+0.5
2,978,353	-				+1.0
2,978,353	-				+0.9
2,978,353	-				+1.3
2,978,353	-				-1.1
2,978,353	-				+0.4
2,978,353	-				+1.2
2,978,353	-				-0.8
2,978,368	-				+0.8
2,978,440	+				-0.4
2,978,440	+				+0.5
2,978,440	+				-0.5
2,978,441	-				+1.1
2,978,441	-				+1.2
2,978,441	-				+0.6
2,978,441	-				-0.3
2,978,441	-				-0.4
2,978,441	-				+0.3
2,978,444	+				-1.8
2,978,444	+				-1.0
2,978,444	+				+1.1
2,978,444	+				-0.2
2,978,444	+				-0.7
2,978,444	+				-0.3
2,978,444	+				+0.5
2,978,444	+				-0.3
2,978,444	+				-0.6
2,978,444	+				-3.0
2,978,444	+				+1.2
2,978,444	+				-3.4
2,978,444	+				-2.9
2,978,444	+				+0.6
2,978,444	+				-2.2
2,978,444	+				+1.0
2,978,444	+				+0.1
2,978,444	+				-0.1
2,978,445	-				+0.8
2,978,445	-				-0.2
2,978,445	-				+0.8
2,978,445	-				-0.3
2,978,445	-				-0.4
2,978,445	-				-0.3
2,978,445	-				-0.1
2,978,445	-				-2.0
2,978,445	-				-0.2
2,978,445	-				-1.0
2,978,445	-				+1.0
2,978,445	-				+0.6
2,978,445	-				-2.6
2,978,445	-				-0.0
2,978,445	-				-1.0
2,978,445	-				+0.1
2,978,445	-				+1.5
2,978,445	-				+0.0
2,978,445	-				-0.5
2,978,447	-				-0.4
2,978,525	+		PFR28_02506	0.14	+0.4
2,978,525	+		PFR28_02506	0.14	+0.9
2,978,525	+		PFR28_02506	0.14	+1.2
2,978,525	+		PFR28_02506	0.14	+2.0
2,978,525	+		PFR28_02506	0.14	+0.6
2,978,526	-		PFR28_02506	0.14	+1.0
2,978,526	-		PFR28_02506	0.14	+0.2
2,978,526	-		PFR28_02506	0.14	-2.2
2,978,526	-		PFR28_02506	0.14	+1.0
2,978,526	-		PFR28_02506	0.14	-0.6
2,978,732	+		PFR28_02506	0.29	-1.6
2,978,733	-		PFR28_02506	0.29	+0.1
2,978,733	-		PFR28_02506	0.29	-2.0
2,978,733	-		PFR28_02506	0.29	+1.5
2,978,831	+		PFR28_02506	0.36	+1.0
2,978,831	+		PFR28_02506	0.36	+1.3
2,978,831	+		PFR28_02506	0.36	+0.8
2,978,831	+		PFR28_02506	0.36	-0.9
2,978,832	-		PFR28_02506	0.36	-0.6
2,978,832	-		PFR28_02506	0.36	+0.6
2,978,837	+		PFR28_02506	0.36	-0.5
2,978,837	+		PFR28_02506	0.36	+0.1
2,978,837	+		PFR28_02506	0.36	+0.2
2,978,837	+		PFR28_02506	0.36	-1.4
2,978,837	+		PFR28_02506	0.36	-0.5
2,978,837	+		PFR28_02506	0.36	+0.7
2,978,837	+		PFR28_02506	0.36	+0.1
2,978,838	-		PFR28_02506	0.37	-0.3
2,978,838	-		PFR28_02506	0.37	-0.0
2,978,838	-		PFR28_02506	0.37	-2.6
2,978,838	-		PFR28_02506	0.37	+0.2
2,978,838	-		PFR28_02506	0.37	-0.2
2,978,838	-		PFR28_02506	0.37	+0.2
2,978,838	-		PFR28_02506	0.37	+0.2
2,978,838	-		PFR28_02506	0.37	-1.1
2,978,838	-		PFR28_02506	0.37	+1.0
2,978,972	+		PFR28_02506	0.46	-0.7
2,978,973	-		PFR28_02506	0.46	-0.7
2,979,078	+		PFR28_02506	0.54	-1.0
2,979,078	+		PFR28_02506	0.54	+0.4
2,979,078	+		PFR28_02506	0.54	-1.2
2,979,079	-		PFR28_02506	0.54	+0.3
2,979,079	-		PFR28_02506	0.54	-0.9
2,979,079	-		PFR28_02506	0.54	+0.9