Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23590 and ABIE41_RS23595 are separated by 12 nucleotides ABIE41_RS23595 and ABIE41_RS23600 are separated by 110 nucleotides ABIE41_RS23600 and ABIE41_RS23605 are separated by 15 nucleotides
ABIE41_RS23590: ABIE41_RS23590 - polyhydroxyalkanoate depolymerase, at 4,862,883 to 4,864,097
_RS23590
ABIE41_RS23595: ABIE41_RS23595 - hypothetical protein, at 4,864,110 to 4,864,262
_RS23595
ABIE41_RS23600: ABIE41_RS23600 - pyridoxamine 5'-phosphate oxidase family protein, at 4,864,373 to 4,864,861
_RS23600
ABIE41_RS23605: ABIE41_RS23605 - phosphatase PAP2 family protein, at 4,864,877 to 4,865,554
_RS23605
Position (kb) 4864
4865 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4863.270 kb on + strand, within ABIE41_RS23590 at 4863.270 kb on + strand, within ABIE41_RS23590 at 4863.270 kb on + strand, within ABIE41_RS23590 at 4863.336 kb on + strand, within ABIE41_RS23590 at 4863.336 kb on + strand, within ABIE41_RS23590 at 4863.336 kb on + strand, within ABIE41_RS23590 at 4863.336 kb on + strand, within ABIE41_RS23590 at 4863.336 kb on + strand, within ABIE41_RS23590 at 4863.337 kb on - strand, within ABIE41_RS23590 at 4863.337 kb on - strand, within ABIE41_RS23590 at 4863.337 kb on - strand, within ABIE41_RS23590 at 4863.387 kb on - strand, within ABIE41_RS23590 at 4863.618 kb on + strand, within ABIE41_RS23590 at 4863.747 kb on + strand, within ABIE41_RS23590 at 4863.747 kb on + strand, within ABIE41_RS23590 at 4863.748 kb on - strand, within ABIE41_RS23590 at 4863.756 kb on + strand, within ABIE41_RS23590 at 4863.756 kb on + strand, within ABIE41_RS23590 at 4863.756 kb on + strand, within ABIE41_RS23590 at 4863.757 kb on - strand, within ABIE41_RS23590 at 4863.790 kb on - strand, within ABIE41_RS23590 at 4863.790 kb on - strand, within ABIE41_RS23590 at 4863.850 kb on - strand, within ABIE41_RS23590 at 4864.020 kb on + strand at 4864.021 kb on - strand at 4864.021 kb on - strand at 4864.059 kb on + strand at 4864.059 kb on + strand at 4864.111 kb on + strand at 4864.112 kb on - strand at 4864.112 kb on - strand at 4864.183 kb on + strand, within ABIE41_RS23595 at 4864.183 kb on + strand, within ABIE41_RS23595 at 4864.192 kb on + strand, within ABIE41_RS23595 at 4864.193 kb on - strand, within ABIE41_RS23595 at 4864.193 kb on - strand, within ABIE41_RS23595 at 4864.193 kb on - strand, within ABIE41_RS23595 at 4864.604 kb on + strand, within ABIE41_RS23600 at 4864.605 kb on - strand, within ABIE41_RS23600 at 4864.605 kb on - strand, within ABIE41_RS23600 at 4865.019 kb on + strand, within ABIE41_RS23605 at 4865.019 kb on + strand, within ABIE41_RS23605 at 4865.020 kb on - strand, within ABIE41_RS23605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,863,270 + ABIE41_RS23590 0.32 +0.3 4,863,270 + ABIE41_RS23590 0.32 -0.9 4,863,270 + ABIE41_RS23590 0.32 -1.4 4,863,336 + ABIE41_RS23590 0.37 +0.7 4,863,336 + ABIE41_RS23590 0.37 +0.2 4,863,336 + ABIE41_RS23590 0.37 +0.3 4,863,336 + ABIE41_RS23590 0.37 -0.5 4,863,336 + ABIE41_RS23590 0.37 -0.3 4,863,337 - ABIE41_RS23590 0.37 +1.6 4,863,337 - ABIE41_RS23590 0.37 -1.8 4,863,337 - ABIE41_RS23590 0.37 -1.0 4,863,387 - ABIE41_RS23590 0.41 +0.1 4,863,618 + ABIE41_RS23590 0.60 -0.4 4,863,747 + ABIE41_RS23590 0.71 -0.5 4,863,747 + ABIE41_RS23590 0.71 +0.0 4,863,748 - ABIE41_RS23590 0.71 -0.3 4,863,756 + ABIE41_RS23590 0.72 +2.2 4,863,756 + ABIE41_RS23590 0.72 +1.4 4,863,756 + ABIE41_RS23590 0.72 +0.0 4,863,757 - ABIE41_RS23590 0.72 -0.3 4,863,790 - ABIE41_RS23590 0.75 +0.7 4,863,790 - ABIE41_RS23590 0.75 -0.3 4,863,850 - ABIE41_RS23590 0.80 +0.4 4,864,020 + +2.9 4,864,021 - +2.5 4,864,021 - -2.0 4,864,059 + -1.2 4,864,059 + +3.9 4,864,111 + -0.5 4,864,112 - -0.1 4,864,112 - +0.0 4,864,183 + ABIE41_RS23595 0.48 -0.3 4,864,183 + ABIE41_RS23595 0.48 +0.6 4,864,192 + ABIE41_RS23595 0.54 +0.1 4,864,193 - ABIE41_RS23595 0.54 -1.3 4,864,193 - ABIE41_RS23595 0.54 -0.2 4,864,193 - ABIE41_RS23595 0.54 -1.4 4,864,604 + ABIE41_RS23600 0.47 -0.2 4,864,605 - ABIE41_RS23600 0.47 -1.2 4,864,605 - ABIE41_RS23600 0.47 -0.0 4,865,019 + ABIE41_RS23605 0.21 -1.0 4,865,019 + ABIE41_RS23605 0.21 -1.4 4,865,020 - ABIE41_RS23605 0.21 -0.2
Or see this region's nucleotide sequence