Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21945 and ABIE41_RS21950 are separated by 87 nucleotides ABIE41_RS21950 and ABIE41_RS21955 are separated by 73 nucleotides
ABIE41_RS21945: ABIE41_RS21945 - malonyl-CoA synthase, at 4,510,120 to 4,511,667
_RS21945
ABIE41_RS21950: ABIE41_RS21950 - malonyl-CoA decarboxylase, at 4,511,755 to 4,513,083
_RS21950
ABIE41_RS21955: ABIE41_RS21955 - 3-oxo-tetronate kinase, at 4,513,157 to 4,514,422
_RS21955
Position (kb) 4511
4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.845 kb on + strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.846 kb on - strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.895 kb on + strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4510.896 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.085 kb on - strand, within ABIE41_RS21945 at 4511.168 kb on + strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.169 kb on - strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.406 kb on + strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.407 kb on - strand, within ABIE41_RS21945 at 4511.408 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on + strand, within ABIE41_RS21945 at 4511.459 kb on - strand, within ABIE41_RS21945 at 4511.576 kb on + strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.577 kb on - strand at 4511.582 kb on + strand at 4511.583 kb on - strand at 4511.688 kb on + strand at 4511.688 kb on + strand at 4511.689 kb on - strand at 4511.859 kb on - strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4511.864 kb on + strand at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.014 kb on + strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.015 kb on - strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.527 kb on + strand, within ABIE41_RS21950 at 4512.999 kb on + strand at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.483 kb on - strand, within ABIE41_RS21955 at 4513.839 kb on + strand, within ABIE41_RS21955 at 4513.840 kb on - strand, within ABIE41_RS21955 at 4513.911 kb on + strand, within ABIE41_RS21955 at 4514.041 kb on - strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.050 kb on - strand, within ABIE41_RS21955 at 4514.051 kb on - strand, within ABIE41_RS21955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,510,845 + ABIE41_RS21945 0.47 -0.2 4,510,845 + ABIE41_RS21945 0.47 +0.4 4,510,846 - ABIE41_RS21945 0.47 +0.0 4,510,846 - ABIE41_RS21945 0.47 -0.2 4,510,846 - ABIE41_RS21945 0.47 +2.3 4,510,846 - ABIE41_RS21945 0.47 +0.2 4,510,846 - ABIE41_RS21945 0.47 -1.4 4,510,895 + ABIE41_RS21945 0.50 +1.4 4,510,895 + ABIE41_RS21945 0.50 -1.4 4,510,895 + ABIE41_RS21945 0.50 -2.6 4,510,895 + ABIE41_RS21945 0.50 +1.6 4,510,895 + ABIE41_RS21945 0.50 +1.7 4,510,896 - ABIE41_RS21945 0.50 +0.9 4,510,896 - ABIE41_RS21945 0.50 +0.2 4,510,896 - ABIE41_RS21945 0.50 +0.3 4,510,896 - ABIE41_RS21945 0.50 -0.1 4,510,896 - ABIE41_RS21945 0.50 -1.4 4,510,896 - ABIE41_RS21945 0.50 -0.1 4,510,896 - ABIE41_RS21945 0.50 -0.2 4,511,085 - ABIE41_RS21945 0.62 +0.1 4,511,085 - ABIE41_RS21945 0.62 +1.0 4,511,085 - ABIE41_RS21945 0.62 +0.6 4,511,085 - ABIE41_RS21945 0.62 +0.1 4,511,168 + ABIE41_RS21945 0.68 -0.1 4,511,169 - ABIE41_RS21945 0.68 -0.2 4,511,169 - ABIE41_RS21945 0.68 -0.5 4,511,169 - ABIE41_RS21945 0.68 -1.5 4,511,406 + ABIE41_RS21945 0.83 -0.4 4,511,406 + ABIE41_RS21945 0.83 +0.2 4,511,406 + ABIE41_RS21945 0.83 -0.0 4,511,407 - ABIE41_RS21945 0.83 -0.1 4,511,407 - ABIE41_RS21945 0.83 +2.9 4,511,407 - ABIE41_RS21945 0.83 -0.3 4,511,408 + ABIE41_RS21945 0.83 +0.7 4,511,459 + ABIE41_RS21945 0.86 -1.1 4,511,459 - ABIE41_RS21945 0.86 -0.4 4,511,576 + +0.9 4,511,577 - +0.1 4,511,577 - -0.0 4,511,577 - +0.3 4,511,582 + -0.6 4,511,583 - +1.5 4,511,688 + +0.3 4,511,688 + -2.0 4,511,689 - +0.4 4,511,859 - -0.0 4,511,864 + -1.5 4,511,864 + +0.9 4,511,864 + -0.9 4,512,014 + ABIE41_RS21950 0.19 +0.3 4,512,014 + ABIE41_RS21950 0.19 +0.2 4,512,014 + ABIE41_RS21950 0.19 +0.1 4,512,014 + ABIE41_RS21950 0.19 -0.6 4,512,014 + ABIE41_RS21950 0.19 -0.3 4,512,015 - ABIE41_RS21950 0.20 +0.3 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 -0.3 4,512,015 - ABIE41_RS21950 0.20 -0.1 4,512,015 - ABIE41_RS21950 0.20 +0.6 4,512,015 - ABIE41_RS21950 0.20 -0.5 4,512,015 - ABIE41_RS21950 0.20 +0.7 4,512,015 - ABIE41_RS21950 0.20 +0.9 4,512,015 - ABIE41_RS21950 0.20 -0.0 4,512,015 - ABIE41_RS21950 0.20 +0.1 4,512,015 - ABIE41_RS21950 0.20 -0.4 4,512,015 - ABIE41_RS21950 0.20 -1.3 4,512,015 - ABIE41_RS21950 0.20 -0.1 4,512,015 - ABIE41_RS21950 0.20 +0.3 4,512,015 - ABIE41_RS21950 0.20 -0.9 4,512,308 + ABIE41_RS21950 0.42 +1.1 4,512,308 + ABIE41_RS21950 0.42 +2.2 4,512,308 + ABIE41_RS21950 0.42 -0.9 4,512,308 + ABIE41_RS21950 0.42 +0.0 4,512,308 + ABIE41_RS21950 0.42 +0.4 4,512,308 + ABIE41_RS21950 0.42 -1.5 4,512,308 + ABIE41_RS21950 0.42 -0.1 4,512,308 + ABIE41_RS21950 0.42 -1.9 4,512,309 - ABIE41_RS21950 0.42 +0.1 4,512,309 - ABIE41_RS21950 0.42 -0.2 4,512,309 - ABIE41_RS21950 0.42 -0.0 4,512,309 - ABIE41_RS21950 0.42 -1.7 4,512,309 - ABIE41_RS21950 0.42 +0.7 4,512,527 + ABIE41_RS21950 0.58 +0.5 4,512,999 + +0.3 4,513,482 + ABIE41_RS21955 0.26 +0.0 4,513,482 + ABIE41_RS21955 0.26 +0.5 4,513,483 - ABIE41_RS21955 0.26 -0.7 4,513,839 + ABIE41_RS21955 0.54 -0.0 4,513,840 - ABIE41_RS21955 0.54 +1.4 4,513,911 + ABIE41_RS21955 0.60 -0.2 4,514,041 - ABIE41_RS21955 0.70 +0.1 4,514,049 + ABIE41_RS21955 0.70 -0.5 4,514,049 + ABIE41_RS21955 0.70 +1.1 4,514,049 + ABIE41_RS21955 0.70 +0.3 4,514,050 - ABIE41_RS21955 0.71 +0.0 4,514,051 - ABIE41_RS21955 0.71 -0.3
Or see this region's nucleotide sequence