Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21895

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21890 and ABIE41_RS21895 are separated by 3 nucleotidesABIE41_RS21895 and ABIE41_RS21900 are separated by 154 nucleotides ABIE41_RS21890: ABIE41_RS21890 - MlaD family protein, at 4,499,708 to 4,500,853 _RS21890 ABIE41_RS21895: ABIE41_RS21895 - ATP-binding cassette domain-containing protein, at 4,500,857 to 4,501,579 _RS21895 ABIE41_RS21900: ABIE41_RS21900 - ABC transporter permease, at 4,501,734 to 4,502,921 _RS21900 Position (kb) 4500 4501 4502Strain fitness (log2 ratio) -1 0 1 2at 4500.143 kb on + strand, within ABIE41_RS21890at 4500.144 kb on - strand, within ABIE41_RS21890at 4500.571 kb on + strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890at 4500.834 kb on + strandat 4500.835 kb on - strandat 4500.835 kb on - strandat 4500.858 kb on + strandat 4500.858 kb on + strandat 4500.858 kb on + strandat 4500.858 kb on + strandat 4500.858 kb on + strandat 4500.859 kb on - strandat 4500.859 kb on - strandat 4500.859 kb on - strandat 4500.859 kb on - strandat 4500.919 kb on - strandat 4500.919 kb on - strandat 4501.020 kb on + strand, within ABIE41_RS21895at 4501.044 kb on - strand, within ABIE41_RS21895at 4501.312 kb on - strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.321 kb on + strand, within ABIE41_RS21895at 4501.701 kb on - strandat 4501.726 kb on + strandat 4501.726 kb on + strandat 4501.991 kb on - strand, within ABIE41_RS21900at 4502.079 kb on - strand, within ABIE41_RS21900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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4,500,143 + ABIE41_RS21890 0.38 -0.1
4,500,144 - ABIE41_RS21890 0.38 -0.0
4,500,571 + ABIE41_RS21890 0.75 -0.3
4,500,572 - ABIE41_RS21890 0.75 -1.6
4,500,572 - ABIE41_RS21890 0.75 -1.1
4,500,572 - ABIE41_RS21890 0.75 -0.0
4,500,834 + -0.7
4,500,835 - +0.3
4,500,835 - -0.6
4,500,858 + +0.0
4,500,858 + +0.9
4,500,858 + -0.1
4,500,858 + -0.9
4,500,858 + +1.4
4,500,859 - +0.2
4,500,859 - +0.9
4,500,859 - +0.1
4,500,859 - -0.3
4,500,919 - -0.2
4,500,919 - -1.3
4,501,020 + ABIE41_RS21895 0.23 -1.5
4,501,044 - ABIE41_RS21895 0.26 +0.6
4,501,312 - ABIE41_RS21895 0.63 -1.3
4,501,321 + ABIE41_RS21895 0.64 -0.3
4,501,321 + ABIE41_RS21895 0.64 +1.9
4,501,321 + ABIE41_RS21895 0.64 +0.4
4,501,321 + ABIE41_RS21895 0.64 -1.2
4,501,321 + ABIE41_RS21895 0.64 -1.5
4,501,321 + ABIE41_RS21895 0.64 -0.6
4,501,701 - -0.1
4,501,726 + -0.3
4,501,726 + +0.3
4,501,991 - ABIE41_RS21900 0.22 -0.8
4,502,079 - ABIE41_RS21900 0.29 -0.1

Or see this region's nucleotide sequence