Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21070 and ABIE41_RS21075 overlap by 1 nucleotides ABIE41_RS21075 and ABIE41_RS21080 overlap by 4 nucleotides ABIE41_RS21080 and ABIE41_RS21085 are separated by 147 nucleotides ABIE41_RS21085 and ABIE41_RS21090 overlap by 4 nucleotides
ABIE41_RS21070: ABIE41_RS21070 - ABC transporter permease, at 4,333,845 to 4,334,474
_RS21070
ABIE41_RS21075: ABIE41_RS21075 - ABC transporter permease, at 4,334,474 to 4,335,109
_RS21075
ABIE41_RS21080: ABIE41_RS21080 - ABC transporter ATP-binding protein, at 4,335,106 to 4,336,059
_RS21080
ABIE41_RS21085: ABIE41_RS21085 - PhnD/SsuA/transferrin family substrate-binding protein, at 4,336,207 to 4,337,010
_RS21085
ABIE41_RS21090: ABIE41_RS21090 - ornithine cyclodeaminase family protein, at 4,337,007 to 4,338,017
_RS21090
Position (kb)
4335
4336
4337 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4334.592 kb on + strand, within ABIE41_RS21075 at 4334.593 kb on - strand, within ABIE41_RS21075 at 4334.685 kb on + strand, within ABIE41_RS21075 at 4334.685 kb on + strand, within ABIE41_RS21075 at 4334.686 kb on - strand, within ABIE41_RS21075 at 4334.687 kb on - strand, within ABIE41_RS21075 at 4334.735 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.761 kb on + strand, within ABIE41_RS21075 at 4334.762 kb on - strand, within ABIE41_RS21075 at 4334.762 kb on - strand, within ABIE41_RS21075 at 4334.762 kb on - strand, within ABIE41_RS21075 at 4334.762 kb on - strand, within ABIE41_RS21075 at 4334.762 kb on - strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.765 kb on + strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4334.766 kb on - strand, within ABIE41_RS21075 at 4335.381 kb on + strand, within ABIE41_RS21080 at 4335.382 kb on - strand, within ABIE41_RS21080 at 4335.467 kb on + strand, within ABIE41_RS21080 at 4335.467 kb on + strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.468 kb on - strand, within ABIE41_RS21080 at 4335.624 kb on - strand, within ABIE41_RS21080 at 4335.763 kb on + strand, within ABIE41_RS21080 at 4335.763 kb on + strand, within ABIE41_RS21080 at 4335.763 kb on + strand, within ABIE41_RS21080 at 4335.763 kb on + strand, within ABIE41_RS21080 at 4335.764 kb on - strand, within ABIE41_RS21080 at 4335.764 kb on - strand, within ABIE41_RS21080 at 4336.049 kb on + strand at 4336.049 kb on + strand at 4336.050 kb on - strand at 4336.050 kb on - strand at 4336.156 kb on + strand at 4336.269 kb on - strand at 4336.300 kb on + strand, within ABIE41_RS21085 at 4336.493 kb on + strand, within ABIE41_RS21085 at 4336.494 kb on - strand, within ABIE41_RS21085 at 4336.500 kb on - strand, within ABIE41_RS21085 at 4336.589 kb on + strand, within ABIE41_RS21085 at 4336.589 kb on + strand, within ABIE41_RS21085 at 4336.590 kb on - strand, within ABIE41_RS21085 at 4336.746 kb on - strand, within ABIE41_RS21085 at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.982 kb on + strand at 4336.983 kb on - strand at 4336.983 kb on - strand at 4336.983 kb on - strand at 4336.983 kb on - strand at 4336.983 kb on - strand at 4336.983 kb on - strand at 4337.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,334,592 + ABIE41_RS21075 0.19 +5.2 4,334,593 - ABIE41_RS21075 0.19 +0.4 4,334,685 + ABIE41_RS21075 0.33 -2.2 4,334,685 + ABIE41_RS21075 0.33 +1.2 4,334,686 - ABIE41_RS21075 0.33 +0.5 4,334,687 - ABIE41_RS21075 0.33 +1.6 4,334,735 + ABIE41_RS21075 0.41 -0.1 4,334,761 + ABIE41_RS21075 0.45 -0.5 4,334,761 + ABIE41_RS21075 0.45 +0.4 4,334,761 + ABIE41_RS21075 0.45 +0.9 4,334,761 + ABIE41_RS21075 0.45 +0.9 4,334,761 + ABIE41_RS21075 0.45 -0.5 4,334,761 + ABIE41_RS21075 0.45 -0.3 4,334,762 - ABIE41_RS21075 0.45 +0.1 4,334,762 - ABIE41_RS21075 0.45 -1.9 4,334,762 - ABIE41_RS21075 0.45 -1.5 4,334,762 - ABIE41_RS21075 0.45 -1.2 4,334,762 - ABIE41_RS21075 0.45 -0.3 4,334,765 + ABIE41_RS21075 0.46 -0.1 4,334,765 + ABIE41_RS21075 0.46 +0.7 4,334,765 + ABIE41_RS21075 0.46 +0.3 4,334,765 + ABIE41_RS21075 0.46 -0.2 4,334,765 + ABIE41_RS21075 0.46 +4.5 4,334,765 + ABIE41_RS21075 0.46 +0.7 4,334,766 - ABIE41_RS21075 0.46 -1.7 4,334,766 - ABIE41_RS21075 0.46 -0.7 4,334,766 - ABIE41_RS21075 0.46 -0.2 4,334,766 - ABIE41_RS21075 0.46 -0.4 4,334,766 - ABIE41_RS21075 0.46 -0.3 4,334,766 - ABIE41_RS21075 0.46 +0.1 4,334,766 - ABIE41_RS21075 0.46 +0.2 4,334,766 - ABIE41_RS21075 0.46 -0.8 4,334,766 - ABIE41_RS21075 0.46 -1.6 4,335,381 + ABIE41_RS21080 0.29 +0.0 4,335,382 - ABIE41_RS21080 0.29 -0.0 4,335,467 + ABIE41_RS21080 0.38 -0.3 4,335,467 + ABIE41_RS21080 0.38 -0.8 4,335,468 - ABIE41_RS21080 0.38 -2.0 4,335,468 - ABIE41_RS21080 0.38 -2.1 4,335,468 - ABIE41_RS21080 0.38 +0.4 4,335,468 - ABIE41_RS21080 0.38 +0.0 4,335,468 - ABIE41_RS21080 0.38 +0.1 4,335,468 - ABIE41_RS21080 0.38 -1.4 4,335,468 - ABIE41_RS21080 0.38 +0.2 4,335,624 - ABIE41_RS21080 0.54 +1.2 4,335,763 + ABIE41_RS21080 0.69 -0.2 4,335,763 + ABIE41_RS21080 0.69 -1.3 4,335,763 + ABIE41_RS21080 0.69 +0.8 4,335,763 + ABIE41_RS21080 0.69 -0.1 4,335,764 - ABIE41_RS21080 0.69 +0.2 4,335,764 - ABIE41_RS21080 0.69 -0.7 4,336,049 + +0.5 4,336,049 + -0.7 4,336,050 - -0.2 4,336,050 - +0.3 4,336,156 + +1.9 4,336,269 - -0.1 4,336,300 + ABIE41_RS21085 0.12 -0.9 4,336,493 + ABIE41_RS21085 0.36 -0.4 4,336,494 - ABIE41_RS21085 0.36 +0.1 4,336,500 - ABIE41_RS21085 0.36 +1.2 4,336,589 + ABIE41_RS21085 0.48 +0.7 4,336,589 + ABIE41_RS21085 0.48 +1.3 4,336,590 - ABIE41_RS21085 0.48 -0.7 4,336,746 - ABIE41_RS21085 0.67 +1.7 4,336,982 + -0.3 4,336,982 + +1.2 4,336,982 + -0.3 4,336,982 + -0.2 4,336,982 + -1.1 4,336,982 + +0.4 4,336,982 + +0.7 4,336,982 + -0.3 4,336,983 - +1.1 4,336,983 - -0.0 4,336,983 - -0.5 4,336,983 - +0.6 4,336,983 - -0.7 4,336,983 - -2.4 4,337,015 - -1.3
Or see this region's nucleotide sequence