Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21080

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21070 and ABIE41_RS21075 overlap by 1 nucleotidesABIE41_RS21075 and ABIE41_RS21080 overlap by 4 nucleotidesABIE41_RS21080 and ABIE41_RS21085 are separated by 147 nucleotidesABIE41_RS21085 and ABIE41_RS21090 overlap by 4 nucleotides ABIE41_RS21070: ABIE41_RS21070 - ABC transporter permease, at 4,333,845 to 4,334,474 _RS21070 ABIE41_RS21075: ABIE41_RS21075 - ABC transporter permease, at 4,334,474 to 4,335,109 _RS21075 ABIE41_RS21080: ABIE41_RS21080 - ABC transporter ATP-binding protein, at 4,335,106 to 4,336,059 _RS21080 ABIE41_RS21085: ABIE41_RS21085 - PhnD/SsuA/transferrin family substrate-binding protein, at 4,336,207 to 4,337,010 _RS21085 ABIE41_RS21090: ABIE41_RS21090 - ornithine cyclodeaminase family protein, at 4,337,007 to 4,338,017 _RS21090 Position (kb) 4335 4336 4337Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4334.592 kb on + strand, within ABIE41_RS21075at 4334.593 kb on - strand, within ABIE41_RS21075at 4334.685 kb on + strand, within ABIE41_RS21075at 4334.685 kb on + strand, within ABIE41_RS21075at 4334.686 kb on - strand, within ABIE41_RS21075at 4334.687 kb on - strand, within ABIE41_RS21075at 4334.735 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.761 kb on + strand, within ABIE41_RS21075at 4334.762 kb on - strand, within ABIE41_RS21075at 4334.762 kb on - strand, within ABIE41_RS21075at 4334.762 kb on - strand, within ABIE41_RS21075at 4334.762 kb on - strand, within ABIE41_RS21075at 4334.762 kb on - strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.765 kb on + strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4334.766 kb on - strand, within ABIE41_RS21075at 4335.381 kb on + strand, within ABIE41_RS21080at 4335.382 kb on - strand, within ABIE41_RS21080at 4335.467 kb on + strand, within ABIE41_RS21080at 4335.467 kb on + strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.468 kb on - strand, within ABIE41_RS21080at 4335.624 kb on - strand, within ABIE41_RS21080at 4335.763 kb on + strand, within ABIE41_RS21080at 4335.763 kb on + strand, within ABIE41_RS21080at 4335.763 kb on + strand, within ABIE41_RS21080at 4335.763 kb on + strand, within ABIE41_RS21080at 4335.764 kb on - strand, within ABIE41_RS21080at 4335.764 kb on - strand, within ABIE41_RS21080at 4336.049 kb on + strandat 4336.049 kb on + strandat 4336.050 kb on - strandat 4336.050 kb on - strandat 4336.156 kb on + strandat 4336.269 kb on - strandat 4336.300 kb on + strand, within ABIE41_RS21085at 4336.493 kb on + strand, within ABIE41_RS21085at 4336.494 kb on - strand, within ABIE41_RS21085at 4336.500 kb on - strand, within ABIE41_RS21085at 4336.589 kb on + strand, within ABIE41_RS21085at 4336.589 kb on + strand, within ABIE41_RS21085at 4336.590 kb on - strand, within ABIE41_RS21085at 4336.746 kb on - strand, within ABIE41_RS21085at 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.982 kb on + strandat 4336.983 kb on - strandat 4336.983 kb on - strandat 4336.983 kb on - strandat 4336.983 kb on - strandat 4336.983 kb on - strandat 4336.983 kb on - strandat 4337.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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4,334,592 + ABIE41_RS21075 0.19 +5.2
4,334,593 - ABIE41_RS21075 0.19 +0.4
4,334,685 + ABIE41_RS21075 0.33 -2.2
4,334,685 + ABIE41_RS21075 0.33 +1.2
4,334,686 - ABIE41_RS21075 0.33 +0.5
4,334,687 - ABIE41_RS21075 0.33 +1.6
4,334,735 + ABIE41_RS21075 0.41 -0.1
4,334,761 + ABIE41_RS21075 0.45 -0.5
4,334,761 + ABIE41_RS21075 0.45 +0.4
4,334,761 + ABIE41_RS21075 0.45 +0.9
4,334,761 + ABIE41_RS21075 0.45 +0.9
4,334,761 + ABIE41_RS21075 0.45 -0.5
4,334,761 + ABIE41_RS21075 0.45 -0.3
4,334,762 - ABIE41_RS21075 0.45 +0.1
4,334,762 - ABIE41_RS21075 0.45 -1.9
4,334,762 - ABIE41_RS21075 0.45 -1.5
4,334,762 - ABIE41_RS21075 0.45 -1.2
4,334,762 - ABIE41_RS21075 0.45 -0.3
4,334,765 + ABIE41_RS21075 0.46 -0.1
4,334,765 + ABIE41_RS21075 0.46 +0.7
4,334,765 + ABIE41_RS21075 0.46 +0.3
4,334,765 + ABIE41_RS21075 0.46 -0.2
4,334,765 + ABIE41_RS21075 0.46 +4.5
4,334,765 + ABIE41_RS21075 0.46 +0.7
4,334,766 - ABIE41_RS21075 0.46 -1.7
4,334,766 - ABIE41_RS21075 0.46 -0.7
4,334,766 - ABIE41_RS21075 0.46 -0.2
4,334,766 - ABIE41_RS21075 0.46 -0.4
4,334,766 - ABIE41_RS21075 0.46 -0.3
4,334,766 - ABIE41_RS21075 0.46 +0.1
4,334,766 - ABIE41_RS21075 0.46 +0.2
4,334,766 - ABIE41_RS21075 0.46 -0.8
4,334,766 - ABIE41_RS21075 0.46 -1.6
4,335,381 + ABIE41_RS21080 0.29 +0.0
4,335,382 - ABIE41_RS21080 0.29 -0.0
4,335,467 + ABIE41_RS21080 0.38 -0.3
4,335,467 + ABIE41_RS21080 0.38 -0.8
4,335,468 - ABIE41_RS21080 0.38 -2.0
4,335,468 - ABIE41_RS21080 0.38 -2.1
4,335,468 - ABIE41_RS21080 0.38 +0.4
4,335,468 - ABIE41_RS21080 0.38 +0.0
4,335,468 - ABIE41_RS21080 0.38 +0.1
4,335,468 - ABIE41_RS21080 0.38 -1.4
4,335,468 - ABIE41_RS21080 0.38 +0.2
4,335,624 - ABIE41_RS21080 0.54 +1.2
4,335,763 + ABIE41_RS21080 0.69 -0.2
4,335,763 + ABIE41_RS21080 0.69 -1.3
4,335,763 + ABIE41_RS21080 0.69 +0.8
4,335,763 + ABIE41_RS21080 0.69 -0.1
4,335,764 - ABIE41_RS21080 0.69 +0.2
4,335,764 - ABIE41_RS21080 0.69 -0.7
4,336,049 + +0.5
4,336,049 + -0.7
4,336,050 - -0.2
4,336,050 - +0.3
4,336,156 + +1.9
4,336,269 - -0.1
4,336,300 + ABIE41_RS21085 0.12 -0.9
4,336,493 + ABIE41_RS21085 0.36 -0.4
4,336,494 - ABIE41_RS21085 0.36 +0.1
4,336,500 - ABIE41_RS21085 0.36 +1.2
4,336,589 + ABIE41_RS21085 0.48 +0.7
4,336,589 + ABIE41_RS21085 0.48 +1.3
4,336,590 - ABIE41_RS21085 0.48 -0.7
4,336,746 - ABIE41_RS21085 0.67 +1.7
4,336,982 + -0.3
4,336,982 + +1.2
4,336,982 + -0.3
4,336,982 + -0.2
4,336,982 + -1.1
4,336,982 + +0.4
4,336,982 + +0.7
4,336,982 + -0.3
4,336,983 - +1.1
4,336,983 - -0.0
4,336,983 - -0.5
4,336,983 - +0.6
4,336,983 - -0.7
4,336,983 - -2.4
4,337,015 - -1.3

Or see this region's nucleotide sequence