Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08000 and ABIE41_RS08005 are separated by 153 nucleotides ABIE41_RS08005 and ABIE41_RS08010 are separated by 14 nucleotides ABIE41_RS08010 and ABIE41_RS08015 are separated by 109 nucleotides ABIE41_RS08015 and ABIE41_RS08020 are separated by 8 nucleotides
ABIE41_RS08000: ABIE41_RS08000 - AMP-binding protein, at 1,644,272 to 1,645,888
_RS08000
ABIE41_RS08005: ABIE41_RS08005 - hypothetical protein, at 1,646,042 to 1,646,197
_RS08005
ABIE41_RS08010: ABIE41_RS08010 - protein meaA, at 1,646,212 to 1,648,203
_RS08010
ABIE41_RS08015: ABIE41_RS08015 - aldose 1-epimerase family protein, at 1,648,313 to 1,649,188
_RS08015
ABIE41_RS08020: ABIE41_RS08020 - OmpA family protein, at 1,649,197 to 1,650,276
_RS08020
Position (kb) 1646
1647
1648
1649 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.314 kb on + strand, within ABIE41_RS08000 at 1645.315 kb on - strand, within ABIE41_RS08000 at 1645.315 kb on - strand, within ABIE41_RS08000 at 1645.315 kb on - strand, within ABIE41_RS08000 at 1645.315 kb on - strand, within ABIE41_RS08000 at 1645.315 kb on - strand, within ABIE41_RS08000 at 1645.474 kb on + strand, within ABIE41_RS08000 at 1645.822 kb on - strand at 1645.921 kb on - strand at 1646.283 kb on + strand at 1646.283 kb on + strand at 1646.283 kb on + strand at 1646.283 kb on + strand at 1646.285 kb on + strand at 1646.285 kb on + strand at 1646.285 kb on + strand at 1646.285 kb on + strand at 1646.285 kb on + strand at 1646.286 kb on - strand at 1646.426 kb on - strand, within ABIE41_RS08010 at 1646.445 kb on + strand, within ABIE41_RS08010 at 1646.507 kb on + strand, within ABIE41_RS08010 at 1646.507 kb on + strand, within ABIE41_RS08010 at 1646.507 kb on + strand, within ABIE41_RS08010 at 1646.507 kb on + strand, within ABIE41_RS08010 at 1646.508 kb on - strand, within ABIE41_RS08010 at 1646.508 kb on - strand, within ABIE41_RS08010 at 1646.508 kb on - strand, within ABIE41_RS08010 at 1647.056 kb on + strand, within ABIE41_RS08010 at 1647.056 kb on + strand, within ABIE41_RS08010 at 1647.187 kb on + strand, within ABIE41_RS08010 at 1647.203 kb on + strand, within ABIE41_RS08010 at 1647.203 kb on + strand, within ABIE41_RS08010 at 1647.350 kb on + strand, within ABIE41_RS08010 at 1647.408 kb on - strand, within ABIE41_RS08010 at 1647.443 kb on + strand, within ABIE41_RS08010 at 1647.674 kb on + strand, within ABIE41_RS08010 at 1647.675 kb on - strand, within ABIE41_RS08010 at 1647.675 kb on - strand, within ABIE41_RS08010 at 1647.773 kb on + strand, within ABIE41_RS08010 at 1647.773 kb on + strand, within ABIE41_RS08010 at 1647.774 kb on - strand, within ABIE41_RS08010 at 1647.774 kb on - strand, within ABIE41_RS08010 at 1647.774 kb on - strand, within ABIE41_RS08010 at 1647.791 kb on + strand, within ABIE41_RS08010 at 1647.792 kb on - strand, within ABIE41_RS08010 at 1647.792 kb on - strand, within ABIE41_RS08010 at 1647.792 kb on - strand, within ABIE41_RS08010 at 1647.792 kb on - strand, within ABIE41_RS08010 at 1647.792 kb on - strand, within ABIE41_RS08010 at 1647.870 kb on - strand, within ABIE41_RS08010 at 1647.870 kb on - strand, within ABIE41_RS08010 at 1648.028 kb on + strand at 1648.028 kb on + strand at 1648.029 kb on - strand at 1648.136 kb on + strand at 1648.136 kb on + strand at 1648.137 kb on - strand at 1648.137 kb on - strand at 1648.255 kb on + strand at 1648.255 kb on + strand at 1648.514 kb on + strand, within ABIE41_RS08015 at 1648.515 kb on - strand, within ABIE41_RS08015 at 1648.546 kb on - strand, within ABIE41_RS08015 at 1648.546 kb on - strand, within ABIE41_RS08015 at 1648.851 kb on + strand, within ABIE41_RS08015 at 1648.851 kb on + strand, within ABIE41_RS08015 at 1648.851 kb on + strand, within ABIE41_RS08015 at 1648.852 kb on - strand, within ABIE41_RS08015 at 1648.852 kb on - strand, within ABIE41_RS08015 at 1648.852 kb on - strand, within ABIE41_RS08015 at 1648.852 kb on - strand, within ABIE41_RS08015 at 1648.852 kb on - strand, within ABIE41_RS08015
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 1,645,314 + ABIE41_RS08000 0.64 -0.1 1,645,314 + ABIE41_RS08000 0.64 +0.1 1,645,314 + ABIE41_RS08000 0.64 +0.1 1,645,314 + ABIE41_RS08000 0.64 -0.5 1,645,314 + ABIE41_RS08000 0.64 +0.3 1,645,314 + ABIE41_RS08000 0.64 +1.7 1,645,314 + ABIE41_RS08000 0.64 -0.6 1,645,314 + ABIE41_RS08000 0.64 +1.0 1,645,315 - ABIE41_RS08000 0.65 -0.2 1,645,315 - ABIE41_RS08000 0.65 +0.3 1,645,315 - ABIE41_RS08000 0.65 -0.8 1,645,315 - ABIE41_RS08000 0.65 +0.2 1,645,315 - ABIE41_RS08000 0.65 +0.5 1,645,474 + ABIE41_RS08000 0.74 -0.4 1,645,822 - -0.4 1,645,921 - -0.2 1,646,283 + -0.3 1,646,283 + +0.2 1,646,283 + +1.9 1,646,283 + +0.4 1,646,285 + +2.6 1,646,285 + +0.6 1,646,285 + -1.0 1,646,285 + -0.6 1,646,285 + +1.2 1,646,286 - +0.0 1,646,426 - ABIE41_RS08010 0.11 -0.4 1,646,445 + ABIE41_RS08010 0.12 -0.3 1,646,507 + ABIE41_RS08010 0.15 -0.6 1,646,507 + ABIE41_RS08010 0.15 +0.3 1,646,507 + ABIE41_RS08010 0.15 -0.0 1,646,507 + ABIE41_RS08010 0.15 +1.3 1,646,508 - ABIE41_RS08010 0.15 +0.1 1,646,508 - ABIE41_RS08010 0.15 -0.3 1,646,508 - ABIE41_RS08010 0.15 +0.4 1,647,056 + ABIE41_RS08010 0.42 +1.2 1,647,056 + ABIE41_RS08010 0.42 -0.3 1,647,187 + ABIE41_RS08010 0.49 +0.3 1,647,203 + ABIE41_RS08010 0.50 +0.3 1,647,203 + ABIE41_RS08010 0.50 -1.3 1,647,350 + ABIE41_RS08010 0.57 +0.6 1,647,408 - ABIE41_RS08010 0.60 +0.5 1,647,443 + ABIE41_RS08010 0.62 -2.7 1,647,674 + ABIE41_RS08010 0.73 +0.8 1,647,675 - ABIE41_RS08010 0.73 -0.1 1,647,675 - ABIE41_RS08010 0.73 +0.2 1,647,773 + ABIE41_RS08010 0.78 -1.0 1,647,773 + ABIE41_RS08010 0.78 -0.4 1,647,774 - ABIE41_RS08010 0.78 -1.1 1,647,774 - ABIE41_RS08010 0.78 -0.7 1,647,774 - ABIE41_RS08010 0.78 +0.3 1,647,791 + ABIE41_RS08010 0.79 -0.2 1,647,792 - ABIE41_RS08010 0.79 -0.1 1,647,792 - ABIE41_RS08010 0.79 -2.4 1,647,792 - ABIE41_RS08010 0.79 +0.4 1,647,792 - ABIE41_RS08010 0.79 +0.7 1,647,792 - ABIE41_RS08010 0.79 +0.8 1,647,870 - ABIE41_RS08010 0.83 +0.2 1,647,870 - ABIE41_RS08010 0.83 +0.1 1,648,028 + +0.9 1,648,028 + -0.2 1,648,029 - +0.8 1,648,136 + +0.4 1,648,136 + -0.6 1,648,137 - -0.4 1,648,137 - -2.0 1,648,255 + -0.8 1,648,255 + -0.6 1,648,514 + ABIE41_RS08015 0.23 -0.7 1,648,515 - ABIE41_RS08015 0.23 -0.5 1,648,546 - ABIE41_RS08015 0.27 +0.3 1,648,546 - ABIE41_RS08015 0.27 +0.4 1,648,851 + ABIE41_RS08015 0.61 -0.5 1,648,851 + ABIE41_RS08015 0.61 -0.6 1,648,851 + ABIE41_RS08015 0.61 -0.4 1,648,852 - ABIE41_RS08015 0.62 -0.6 1,648,852 - ABIE41_RS08015 0.62 -0.1 1,648,852 - ABIE41_RS08015 0.62 +0.9 1,648,852 - ABIE41_RS08015 0.62 -1.9 1,648,852 - ABIE41_RS08015 0.62 +0.1
Or see this region's nucleotide sequence