Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04035 and ABIE41_RS04040 are separated by 13 nucleotides ABIE41_RS04040 and ABIE41_RS04045 are separated by 192 nucleotides ABIE41_RS04045 and ABIE41_RS04050 are separated by 63 nucleotides
ABIE41_RS04035: ABIE41_RS04035 - recombination mediator RecR, at 836,809 to 837,414
_RS04035
ABIE41_RS04040: ABIE41_RS04040 - outer membrane protein, at 837,428 to 838,153
_RS04040
ABIE41_RS04045: ABIE41_RS04045 - YihY/virulence factor BrkB family protein, at 838,346 to 839,395
_RS04045
ABIE41_RS04050: ABIE41_RS04050 - FAD-dependent oxidoreductase, at 839,459 to 840,700
_RS04050
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 837.361 kb on + strand at 837.438 kb on + strand at 837.438 kb on + strand at 837.439 kb on - strand at 837.439 kb on - strand at 837.540 kb on + strand, within ABIE41_RS04040 at 837.541 kb on - strand, within ABIE41_RS04040 at 837.541 kb on - strand, within ABIE41_RS04040 at 837.546 kb on + strand, within ABIE41_RS04040 at 837.547 kb on - strand, within ABIE41_RS04040 at 837.574 kb on + strand, within ABIE41_RS04040 at 837.574 kb on + strand, within ABIE41_RS04040 at 837.574 kb on + strand, within ABIE41_RS04040 at 837.575 kb on - strand, within ABIE41_RS04040 at 837.575 kb on - strand, within ABIE41_RS04040 at 837.575 kb on - strand, within ABIE41_RS04040 at 837.577 kb on - strand, within ABIE41_RS04040 at 837.577 kb on - strand, within ABIE41_RS04040 at 837.666 kb on + strand, within ABIE41_RS04040 at 837.666 kb on + strand, within ABIE41_RS04040 at 837.667 kb on - strand, within ABIE41_RS04040 at 837.667 kb on - strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.702 kb on + strand, within ABIE41_RS04040 at 837.703 kb on - strand, within ABIE41_RS04040 at 837.703 kb on - strand, within ABIE41_RS04040 at 837.703 kb on - strand, within ABIE41_RS04040 at 837.703 kb on - strand, within ABIE41_RS04040 at 837.861 kb on + strand, within ABIE41_RS04040 at 837.861 kb on + strand, within ABIE41_RS04040 at 837.862 kb on - strand, within ABIE41_RS04040 at 837.862 kb on - strand, within ABIE41_RS04040 at 837.862 kb on - strand, within ABIE41_RS04040 at 837.979 kb on - strand, within ABIE41_RS04040 at 837.999 kb on + strand, within ABIE41_RS04040 at 838.000 kb on - strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.017 kb on + strand, within ABIE41_RS04040 at 838.018 kb on - strand, within ABIE41_RS04040 at 838.018 kb on - strand, within ABIE41_RS04040 at 838.018 kb on - strand, within ABIE41_RS04040 at 838.018 kb on - strand, within ABIE41_RS04040 at 838.171 kb on + strand at 838.171 kb on + strand at 838.227 kb on + strand at 838.227 kb on + strand at 838.227 kb on + strand at 838.227 kb on + strand at 838.228 kb on - strand at 838.228 kb on - strand at 838.299 kb on + strand at 838.357 kb on - strand at 838.625 kb on + strand, within ABIE41_RS04045 at 838.625 kb on + strand, within ABIE41_RS04045 at 838.625 kb on + strand, within ABIE41_RS04045 at 838.625 kb on + strand, within ABIE41_RS04045 at 838.625 kb on + strand, within ABIE41_RS04045 at 838.626 kb on - strand, within ABIE41_RS04045 at 838.626 kb on - strand, within ABIE41_RS04045 at 838.632 kb on - strand, within ABIE41_RS04045 at 838.844 kb on + strand, within ABIE41_RS04045 at 838.844 kb on + strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 838.845 kb on - strand, within ABIE41_RS04045 at 839.063 kb on + strand, within ABIE41_RS04045 at 839.063 kb on + strand, within ABIE41_RS04045 at 839.168 kb on + strand, within ABIE41_RS04045 at 839.168 kb on + strand, within ABIE41_RS04045 at 839.168 kb on + strand, within ABIE41_RS04045 at 839.168 kb on + strand, within ABIE41_RS04045 at 839.168 kb on + strand, within ABIE41_RS04045 at 839.169 kb on - strand, within ABIE41_RS04045 at 839.189 kb on + strand, within ABIE41_RS04045 at 839.190 kb on - strand, within ABIE41_RS04045 at 839.201 kb on + strand, within ABIE41_RS04045 at 839.201 kb on + strand, within ABIE41_RS04045 at 839.202 kb on - strand, within ABIE41_RS04045 at 839.394 kb on - strand at 839.747 kb on + strand, within ABIE41_RS04050 at 839.747 kb on + strand, within ABIE41_RS04050 at 839.864 kb on + strand, within ABIE41_RS04050 at 839.865 kb on - strand, within ABIE41_RS04050 at 839.865 kb on - strand, within ABIE41_RS04050 at 839.865 kb on - strand, within ABIE41_RS04050 at 839.975 kb on + strand, within ABIE41_RS04050 at 840.191 kb on + strand, within ABIE41_RS04050 at 840.191 kb on + strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.192 kb on - strand, within ABIE41_RS04050 at 840.320 kb on + strand, within ABIE41_RS04050 at 840.320 kb on + strand, within ABIE41_RS04050 at 840.320 kb on + strand, within ABIE41_RS04050 at 840.321 kb on - strand, within ABIE41_RS04050 at 840.326 kb on + strand, within ABIE41_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 837,361 + -0.8 837,438 + -0.1 837,438 + +1.6 837,439 - -0.4 837,439 - +0.6 837,540 + ABIE41_RS04040 0.15 -0.1 837,541 - ABIE41_RS04040 0.16 +0.0 837,541 - ABIE41_RS04040 0.16 +1.6 837,546 + ABIE41_RS04040 0.16 -0.7 837,547 - ABIE41_RS04040 0.16 +0.5 837,574 + ABIE41_RS04040 0.20 +0.5 837,574 + ABIE41_RS04040 0.20 +3.9 837,574 + ABIE41_RS04040 0.20 +0.9 837,575 - ABIE41_RS04040 0.20 -0.0 837,575 - ABIE41_RS04040 0.20 +0.1 837,575 - ABIE41_RS04040 0.20 +0.2 837,577 - ABIE41_RS04040 0.21 -2.5 837,577 - ABIE41_RS04040 0.21 -0.2 837,666 + ABIE41_RS04040 0.33 -0.4 837,666 + ABIE41_RS04040 0.33 +0.2 837,667 - ABIE41_RS04040 0.33 +0.4 837,667 - ABIE41_RS04040 0.33 -0.2 837,702 + ABIE41_RS04040 0.38 -0.6 837,702 + ABIE41_RS04040 0.38 -0.2 837,702 + ABIE41_RS04040 0.38 +1.6 837,702 + ABIE41_RS04040 0.38 -1.2 837,702 + ABIE41_RS04040 0.38 -0.3 837,702 + ABIE41_RS04040 0.38 -0.1 837,703 - ABIE41_RS04040 0.38 +0.3 837,703 - ABIE41_RS04040 0.38 +0.3 837,703 - ABIE41_RS04040 0.38 +0.1 837,703 - ABIE41_RS04040 0.38 +0.9 837,861 + ABIE41_RS04040 0.60 +0.7 837,861 + ABIE41_RS04040 0.60 -1.3 837,862 - ABIE41_RS04040 0.60 -0.7 837,862 - ABIE41_RS04040 0.60 -0.6 837,862 - ABIE41_RS04040 0.60 -0.2 837,979 - ABIE41_RS04040 0.76 -0.2 837,999 + ABIE41_RS04040 0.79 -1.5 838,000 - ABIE41_RS04040 0.79 +1.3 838,017 + ABIE41_RS04040 0.81 -1.2 838,017 + ABIE41_RS04040 0.81 +0.5 838,017 + ABIE41_RS04040 0.81 +0.7 838,017 + ABIE41_RS04040 0.81 -2.1 838,017 + ABIE41_RS04040 0.81 +1.9 838,017 + ABIE41_RS04040 0.81 -0.3 838,017 + ABIE41_RS04040 0.81 -1.0 838,018 - ABIE41_RS04040 0.81 +1.9 838,018 - ABIE41_RS04040 0.81 -0.4 838,018 - ABIE41_RS04040 0.81 -0.2 838,018 - ABIE41_RS04040 0.81 +0.1 838,171 + +0.9 838,171 + +0.8 838,227 + -0.1 838,227 + -2.2 838,227 + +0.8 838,227 + +1.1 838,228 - +1.7 838,228 - -1.0 838,299 + +0.2 838,357 - -0.1 838,625 + ABIE41_RS04045 0.27 +0.0 838,625 + ABIE41_RS04045 0.27 +1.3 838,625 + ABIE41_RS04045 0.27 +0.2 838,625 + ABIE41_RS04045 0.27 +0.8 838,625 + ABIE41_RS04045 0.27 +2.1 838,626 - ABIE41_RS04045 0.27 +0.6 838,626 - ABIE41_RS04045 0.27 +1.3 838,632 - ABIE41_RS04045 0.27 +0.3 838,844 + ABIE41_RS04045 0.47 -0.5 838,844 + ABIE41_RS04045 0.47 -0.2 838,845 - ABIE41_RS04045 0.48 +0.2 838,845 - ABIE41_RS04045 0.48 +0.7 838,845 - ABIE41_RS04045 0.48 +1.2 838,845 - ABIE41_RS04045 0.48 -0.2 838,845 - ABIE41_RS04045 0.48 -0.4 838,845 - ABIE41_RS04045 0.48 -1.1 838,845 - ABIE41_RS04045 0.48 +0.1 839,063 + ABIE41_RS04045 0.68 +0.8 839,063 + ABIE41_RS04045 0.68 +0.9 839,168 + ABIE41_RS04045 0.78 -0.0 839,168 + ABIE41_RS04045 0.78 +0.4 839,168 + ABIE41_RS04045 0.78 +0.4 839,168 + ABIE41_RS04045 0.78 +0.5 839,168 + ABIE41_RS04045 0.78 +0.6 839,169 - ABIE41_RS04045 0.78 +0.7 839,189 + ABIE41_RS04045 0.80 -1.1 839,190 - ABIE41_RS04045 0.80 +0.2 839,201 + ABIE41_RS04045 0.81 -1.6 839,201 + ABIE41_RS04045 0.81 -1.9 839,202 - ABIE41_RS04045 0.82 -2.4 839,394 - +0.3 839,747 + ABIE41_RS04050 0.23 -0.5 839,747 + ABIE41_RS04050 0.23 -0.2 839,864 + ABIE41_RS04050 0.33 +0.1 839,865 - ABIE41_RS04050 0.33 +1.0 839,865 - ABIE41_RS04050 0.33 +0.1 839,865 - ABIE41_RS04050 0.33 +0.2 839,975 + ABIE41_RS04050 0.42 +0.0 840,191 + ABIE41_RS04050 0.59 -0.3 840,191 + ABIE41_RS04050 0.59 -0.0 840,192 - ABIE41_RS04050 0.59 +0.8 840,192 - ABIE41_RS04050 0.59 +0.3 840,192 - ABIE41_RS04050 0.59 +0.2 840,192 - ABIE41_RS04050 0.59 +0.3 840,192 - ABIE41_RS04050 0.59 -0.2 840,192 - ABIE41_RS04050 0.59 -1.1 840,192 - ABIE41_RS04050 0.59 +0.3 840,320 + ABIE41_RS04050 0.69 -0.3 840,320 + ABIE41_RS04050 0.69 +0.2 840,320 + ABIE41_RS04050 0.69 -0.9 840,321 - ABIE41_RS04050 0.69 +0.9 840,326 + ABIE41_RS04050 0.70 -1.6
Or see this region's nucleotide sequence