Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01630

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01625 and ABIE41_RS01630 are separated by 8 nucleotidesABIE41_RS01630 and ABIE41_RS01635 are separated by 109 nucleotides ABIE41_RS01625: ABIE41_RS01625 - allantoinase AllB, at 326,714 to 328,168 _RS01625 ABIE41_RS01630: ABIE41_RS01630 - SDR family NAD(P)-dependent oxidoreductase, at 328,177 to 328,971 _RS01630 ABIE41_RS01635: ABIE41_RS01635 - ABC transporter substrate-binding protein, at 329,081 to 330,133 _RS01635 Position (kb) 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 327.360 kb on + strand, within ABIE41_RS01625at 327.360 kb on + strand, within ABIE41_RS01625at 327.361 kb on - strand, within ABIE41_RS01625at 327.361 kb on - strand, within ABIE41_RS01625at 327.535 kb on + strand, within ABIE41_RS01625at 327.536 kb on - strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.786 kb on + strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.787 kb on - strand, within ABIE41_RS01625at 327.948 kb on + strand, within ABIE41_RS01625at 327.948 kb on + strand, within ABIE41_RS01625at 327.949 kb on - strand, within ABIE41_RS01625at 328.294 kb on + strand, within ABIE41_RS01630at 328.295 kb on - strand, within ABIE41_RS01630at 328.496 kb on + strand, within ABIE41_RS01630at 328.497 kb on - strand, within ABIE41_RS01630at 328.999 kb on + strandat 329.457 kb on + strand, within ABIE41_RS01635at 329.785 kb on - strand, within ABIE41_RS01635at 329.785 kb on - strand, within ABIE41_RS01635at 329.877 kb on + strand, within ABIE41_RS01635at 329.877 kb on + strand, within ABIE41_RS01635at 329.878 kb on - strand, within ABIE41_RS01635at 329.878 kb on - strand, within ABIE41_RS01635at 329.934 kb on + strand, within ABIE41_RS01635at 329.961 kb on + strand, within ABIE41_RS01635at 329.961 kb on + strand, within ABIE41_RS01635at 329.961 kb on + strand, within ABIE41_RS01635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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327,360 + ABIE41_RS01625 0.44 +1.2
327,360 + ABIE41_RS01625 0.44 +0.8
327,361 - ABIE41_RS01625 0.44 +0.5
327,361 - ABIE41_RS01625 0.44 +0.7
327,535 + ABIE41_RS01625 0.56 +0.8
327,536 - ABIE41_RS01625 0.56 -0.1
327,786 + ABIE41_RS01625 0.74 -0.1
327,786 + ABIE41_RS01625 0.74 +0.2
327,786 + ABIE41_RS01625 0.74 +0.3
327,786 + ABIE41_RS01625 0.74 +1.5
327,786 + ABIE41_RS01625 0.74 -0.9
327,786 + ABIE41_RS01625 0.74 +1.6
327,787 - ABIE41_RS01625 0.74 -0.8
327,787 - ABIE41_RS01625 0.74 -0.3
327,787 - ABIE41_RS01625 0.74 -1.4
327,787 - ABIE41_RS01625 0.74 +0.9
327,787 - ABIE41_RS01625 0.74 +0.3
327,787 - ABIE41_RS01625 0.74 +0.3
327,787 - ABIE41_RS01625 0.74 -0.5
327,787 - ABIE41_RS01625 0.74 +0.2
327,787 - ABIE41_RS01625 0.74 +0.6
327,948 + ABIE41_RS01625 0.85 +0.1
327,948 + ABIE41_RS01625 0.85 -0.7
327,949 - ABIE41_RS01625 0.85 +0.6
328,294 + ABIE41_RS01630 0.15 +0.5
328,295 - ABIE41_RS01630 0.15 +1.2
328,496 + ABIE41_RS01630 0.40 -1.0
328,497 - ABIE41_RS01630 0.40 -0.4
328,999 + +0.5
329,457 + ABIE41_RS01635 0.36 +1.0
329,785 - ABIE41_RS01635 0.67 +0.0
329,785 - ABIE41_RS01635 0.67 +1.7
329,877 + ABIE41_RS01635 0.76 -2.4
329,877 + ABIE41_RS01635 0.76 +0.3
329,878 - ABIE41_RS01635 0.76 +0.3
329,878 - ABIE41_RS01635 0.76 -0.4
329,934 + ABIE41_RS01635 0.81 +0.3
329,961 + ABIE41_RS01635 0.84 +2.7
329,961 + ABIE41_RS01635 0.84 +1.1
329,961 + ABIE41_RS01635 0.84 -0.3

Or see this region's nucleotide sequence