Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01370

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01360 and ABIE41_RS01365 are separated by 19 nucleotidesABIE41_RS01365 and ABIE41_RS01370 are separated by 5 nucleotidesABIE41_RS01370 and ABIE41_RS01375 are separated by 92 nucleotides ABIE41_RS01360: ABIE41_RS01360 - sialic acid TRAP transporter substrate-binding protein SiaP, at 268,961 to 269,935 _RS01360 ABIE41_RS01365: ABIE41_RS01365 - TRAP transporter small permease, at 269,955 to 270,530 _RS01365 ABIE41_RS01370: ABIE41_RS01370 - TRAP transporter large permease, at 270,536 to 271,930 _RS01370 ABIE41_RS01375: ABIE41_RS01375 - NAD(P)H-quinone oxidoreductase, at 272,023 to 273,024 _RS01375 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 269.543 kb on + strand, within ABIE41_RS01360at 269.544 kb on - strand, within ABIE41_RS01360at 269.830 kb on + strand, within ABIE41_RS01360at 269.831 kb on - strand, within ABIE41_RS01360at 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.950 kb on + strandat 269.951 kb on - strandat 269.951 kb on - strandat 269.951 kb on - strandat 269.951 kb on - strandat 270.048 kb on + strand, within ABIE41_RS01365at 270.049 kb on - strand, within ABIE41_RS01365at 270.049 kb on - strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.126 kb on + strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.127 kb on - strand, within ABIE41_RS01365at 270.171 kb on + strand, within ABIE41_RS01365at 270.172 kb on - strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.230 kb on + strand, within ABIE41_RS01365at 270.231 kb on - strand, within ABIE41_RS01365at 270.249 kb on + strand, within ABIE41_RS01365at 270.250 kb on - strand, within ABIE41_RS01365at 270.318 kb on + strand, within ABIE41_RS01365at 270.324 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.408 kb on + strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.409 kb on - strand, within ABIE41_RS01365at 270.486 kb on + strandat 270.486 kb on + strandat 270.486 kb on + strandat 270.487 kb on - strandat 270.617 kb on + strandat 270.617 kb on + strandat 270.618 kb on - strandat 270.618 kb on - strandat 270.761 kb on + strand, within ABIE41_RS01370at 270.762 kb on - strand, within ABIE41_RS01370at 270.762 kb on - strand, within ABIE41_RS01370at 270.917 kb on + strand, within ABIE41_RS01370at 270.918 kb on - strand, within ABIE41_RS01370at 271.100 kb on + strand, within ABIE41_RS01370at 271.100 kb on + strand, within ABIE41_RS01370at 271.101 kb on - strand, within ABIE41_RS01370at 271.101 kb on - strand, within ABIE41_RS01370at 271.886 kb on + strandat 271.886 kb on + strandat 271.886 kb on + strandat 271.886 kb on + strandat 271.886 kb on + strandat 271.886 kb on + strandat 271.886 kb on + strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.887 kb on - strandat 271.889 kb on - strandat 271.928 kb on + strandat 271.928 kb on + strandat 272.320 kb on + strand, within ABIE41_RS01375at 272.320 kb on + strand, within ABIE41_RS01375at 272.321 kb on - strand, within ABIE41_RS01375at 272.321 kb on - strand, within ABIE41_RS01375at 272.330 kb on - strand, within ABIE41_RS01375at 272.330 kb on - strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.700 kb on + strand, within ABIE41_RS01375at 272.700 kb on + strand, within ABIE41_RS01375at 272.701 kb on - strand, within ABIE41_RS01375

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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269,543 + ABIE41_RS01360 0.60 +0.8
269,544 - ABIE41_RS01360 0.60 -0.8
269,830 + ABIE41_RS01360 0.89 -0.4
269,831 - ABIE41_RS01360 0.89 +2.1
269,950 + -0.5
269,950 + -1.0
269,950 + +0.4
269,950 + +0.5
269,950 + -0.7
269,951 - -0.2
269,951 - -0.2
269,951 - -0.9
269,951 - +1.1
270,048 + ABIE41_RS01365 0.16 +0.7
270,049 - ABIE41_RS01365 0.16 -0.9
270,049 - ABIE41_RS01365 0.16 +0.1
270,126 + ABIE41_RS01365 0.30 +0.3
270,126 + ABIE41_RS01365 0.30 -0.8
270,126 + ABIE41_RS01365 0.30 -0.3
270,127 - ABIE41_RS01365 0.30 +0.5
270,127 - ABIE41_RS01365 0.30 +1.1
270,127 - ABIE41_RS01365 0.30 -1.6
270,171 + ABIE41_RS01365 0.38 -0.7
270,172 - ABIE41_RS01365 0.38 -1.3
270,230 + ABIE41_RS01365 0.48 -0.1
270,230 + ABIE41_RS01365 0.48 +0.0
270,230 + ABIE41_RS01365 0.48 +1.2
270,231 - ABIE41_RS01365 0.48 +0.3
270,249 + ABIE41_RS01365 0.51 +0.9
270,250 - ABIE41_RS01365 0.51 +0.8
270,318 + ABIE41_RS01365 0.63 +0.1
270,324 + ABIE41_RS01365 0.64 -0.4
270,408 + ABIE41_RS01365 0.79 +2.4
270,408 + ABIE41_RS01365 0.79 -0.5
270,408 + ABIE41_RS01365 0.79 -0.7
270,408 + ABIE41_RS01365 0.79 +0.4
270,408 + ABIE41_RS01365 0.79 +0.4
270,409 - ABIE41_RS01365 0.79 -0.5
270,409 - ABIE41_RS01365 0.79 +1.0
270,409 - ABIE41_RS01365 0.79 +0.1
270,409 - ABIE41_RS01365 0.79 -0.6
270,486 + -0.7
270,486 + -0.6
270,486 + +0.2
270,487 - -0.3
270,617 + +0.3
270,617 + -1.2
270,618 - +0.1
270,618 - -1.7
270,761 + ABIE41_RS01370 0.16 -0.4
270,762 - ABIE41_RS01370 0.16 -1.0
270,762 - ABIE41_RS01370 0.16 +0.1
270,917 + ABIE41_RS01370 0.27 +0.5
270,918 - ABIE41_RS01370 0.27 +0.1
271,100 + ABIE41_RS01370 0.40 -0.3
271,100 + ABIE41_RS01370 0.40 -0.3
271,101 - ABIE41_RS01370 0.41 -1.0
271,101 - ABIE41_RS01370 0.41 +0.1
271,886 + +0.6
271,886 + +0.5
271,886 + +1.9
271,886 + +0.4
271,886 + -1.0
271,886 + -0.7
271,886 + +0.1
271,887 - +0.3
271,887 - -0.6
271,887 - -0.8
271,887 - +0.3
271,887 - +0.1
271,887 - +0.6
271,887 - +0.4
271,887 - -2.0
271,887 - -0.4
271,887 - -1.0
271,889 - +0.3
271,928 + -0.0
271,928 + -0.5
272,320 + ABIE41_RS01375 0.30 -0.0
272,320 + ABIE41_RS01375 0.30 -0.0
272,321 - ABIE41_RS01375 0.30 -0.6
272,321 - ABIE41_RS01375 0.30 -0.9
272,330 - ABIE41_RS01375 0.31 +0.0
272,330 - ABIE41_RS01375 0.31 -0.4
272,410 + ABIE41_RS01375 0.39 -0.4
272,410 + ABIE41_RS01375 0.39 +0.4
272,410 + ABIE41_RS01375 0.39 -1.4
272,411 - ABIE41_RS01375 0.39 +0.3
272,411 - ABIE41_RS01375 0.39 -0.9
272,411 - ABIE41_RS01375 0.39 -0.6
272,542 + ABIE41_RS01375 0.52 -0.3
272,542 + ABIE41_RS01375 0.52 +0.2
272,542 + ABIE41_RS01375 0.52 -0.2
272,542 + ABIE41_RS01375 0.52 -2.1
272,542 + ABIE41_RS01375 0.52 -0.3
272,542 + ABIE41_RS01375 0.52 +1.1
272,542 + ABIE41_RS01375 0.52 -1.6
272,698 + ABIE41_RS01375 0.67 -0.4
272,698 + ABIE41_RS01375 0.67 -0.3
272,698 + ABIE41_RS01375 0.67 +0.1
272,698 + ABIE41_RS01375 0.67 +0.4
272,699 - ABIE41_RS01375 0.67 -0.9
272,699 - ABIE41_RS01375 0.67 -0.3
272,699 - ABIE41_RS01375 0.67 -0.3
272,699 - ABIE41_RS01375 0.67 +0.3
272,700 + ABIE41_RS01375 0.68 +0.3
272,700 + ABIE41_RS01375 0.68 +2.6
272,701 - ABIE41_RS01375 0.68 +0.2

Or see this region's nucleotide sequence