Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01230

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS01225 and ABIE41_RS01230 overlap by 4 nucleotidesABIE41_RS01230 and ABIE41_RS01235 are separated by 500 nucleotidesABIE41_RS01235 and ABIE41_RS01240 are separated by 75 nucleotides ABIE41_RS01225: ABIE41_RS01225 - maltose alpha-D-glucosyltransferase, at 241,845 to 245,129 _RS01225 ABIE41_RS01230: ABIE41_RS01230 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 245,126 to 248,056 _RS01230 ABIE41_RS01235: ABIE41_RS01235 - hypothetical protein, at 248,557 to 248,826 _RS01235 ABIE41_RS01240: ABIE41_RS01240 - DNA-3-methyladenine glycosylase, at 248,902 to 249,561 _RS01240 Position (kb) 245 246 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.267 kb on + strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.268 kb on - strand, within ABIE41_RS01225at 244.327 kb on + strand, within ABIE41_RS01225at 244.328 kb on - strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.352 kb on + strand, within ABIE41_RS01225at 244.353 kb on - strand, within ABIE41_RS01225at 244.353 kb on - strand, within ABIE41_RS01225at 244.353 kb on - strand, within ABIE41_RS01225at 244.353 kb on - strand, within ABIE41_RS01225at 244.353 kb on - strand, within ABIE41_RS01225at 244.474 kb on + strand, within ABIE41_RS01225at 244.475 kb on - strand, within ABIE41_RS01225at 244.475 kb on - strand, within ABIE41_RS01225at 244.591 kb on + strand, within ABIE41_RS01225at 244.592 kb on - strand, within ABIE41_RS01225at 244.609 kb on + strand, within ABIE41_RS01225at 244.610 kb on - strand, within ABIE41_RS01225at 244.681 kb on + strand, within ABIE41_RS01225at 244.682 kb on - strand, within ABIE41_RS01225at 244.682 kb on - strand, within ABIE41_RS01225at 244.682 kb on - strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.708 kb on + strand, within ABIE41_RS01225at 244.709 kb on - strand, within ABIE41_RS01225at 244.709 kb on - strand, within ABIE41_RS01225at 244.709 kb on - strand, within ABIE41_RS01225at 244.709 kb on - strand, within ABIE41_RS01225at 244.709 kb on - strand, within ABIE41_RS01225at 244.711 kb on + strand, within ABIE41_RS01225at 244.711 kb on + strand, within ABIE41_RS01225at 244.711 kb on + strand, within ABIE41_RS01225at 244.711 kb on + strand, within ABIE41_RS01225at 244.711 kb on + strand, within ABIE41_RS01225at 244.712 kb on - strand, within ABIE41_RS01225at 244.712 kb on - strand, within ABIE41_RS01225at 244.712 kb on - strand, within ABIE41_RS01225at 244.712 kb on - strand, within ABIE41_RS01225at 244.885 kb on + strandat 244.885 kb on + strandat 244.885 kb on + strandat 244.885 kb on + strandat 244.886 kb on - strandat 244.886 kb on - strandat 244.886 kb on - strandat 244.900 kb on + strandat 244.927 kb on + strandat 244.927 kb on + strandat 244.928 kb on - strandat 244.972 kb on + strandat 244.972 kb on + strandat 244.972 kb on + strandat 244.972 kb on + strandat 244.972 kb on + strandat 244.972 kb on + strandat 244.973 kb on - strandat 245.053 kb on + strandat 245.053 kb on + strandat 245.053 kb on + strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.054 kb on - strandat 245.129 kb on + strandat 245.129 kb on + strandat 245.130 kb on - strandat 245.130 kb on - strandat 245.130 kb on - strandat 245.382 kb on + strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.410 kb on - strandat 245.410 kb on - strandat 245.410 kb on - strandat 245.410 kb on - strandat 245.417 kb on + strandat 245.526 kb on + strand, within ABIE41_RS01230at 245.526 kb on + strand, within ABIE41_RS01230at 245.544 kb on + strand, within ABIE41_RS01230at 245.544 kb on + strand, within ABIE41_RS01230at 245.545 kb on - strand, within ABIE41_RS01230at 245.595 kb on + strand, within ABIE41_RS01230at 245.757 kb on + strand, within ABIE41_RS01230at 245.758 kb on - strand, within ABIE41_RS01230at 245.758 kb on - strand, within ABIE41_RS01230at 245.796 kb on + strand, within ABIE41_RS01230at 245.796 kb on + strand, within ABIE41_RS01230at 245.796 kb on + strand, within ABIE41_RS01230at 245.796 kb on + strand, within ABIE41_RS01230at 245.796 kb on + strand, within ABIE41_RS01230at 245.797 kb on - strand, within ABIE41_RS01230at 245.797 kb on - strand, within ABIE41_RS01230at 245.797 kb on - strand, within ABIE41_RS01230at 245.797 kb on - strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.802 kb on + strand, within ABIE41_RS01230at 245.803 kb on - strand, within ABIE41_RS01230at 245.803 kb on - strand, within ABIE41_RS01230at 245.803 kb on - strand, within ABIE41_RS01230at 245.803 kb on - strand, within ABIE41_RS01230at 245.803 kb on - strand, within ABIE41_RS01230at 245.835 kb on + strand, within ABIE41_RS01230at 245.835 kb on + strand, within ABIE41_RS01230at 245.835 kb on + strand, within ABIE41_RS01230at 245.835 kb on + strand, within ABIE41_RS01230at 245.836 kb on - strand, within ABIE41_RS01230at 245.836 kb on - strand, within ABIE41_RS01230at 246.039 kb on + strand, within ABIE41_RS01230at 246.040 kb on - strand, within ABIE41_RS01230at 246.066 kb on + strand, within ABIE41_RS01230at 246.066 kb on + strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.067 kb on - strand, within ABIE41_RS01230at 246.384 kb on + strand, within ABIE41_RS01230at 246.384 kb on + strand, within ABIE41_RS01230at 246.384 kb on + strand, within ABIE41_RS01230at 246.385 kb on - strand, within ABIE41_RS01230at 246.385 kb on - strand, within ABIE41_RS01230at 246.492 kb on + strand, within ABIE41_RS01230at 246.492 kb on + strand, within ABIE41_RS01230at 246.492 kb on + strand, within ABIE41_RS01230at 246.493 kb on - strand, within ABIE41_RS01230at 246.538 kb on - strand, within ABIE41_RS01230at 246.538 kb on - strand, within ABIE41_RS01230at 246.868 kb on + strand, within ABIE41_RS01230at 246.869 kb on - strand, within ABIE41_RS01230at 246.869 kb on - strand, within ABIE41_RS01230at 246.869 kb on - strand, within ABIE41_RS01230at 246.869 kb on - strand, within ABIE41_RS01230at 247.411 kb on + strand, within ABIE41_RS01230at 247.411 kb on + strand, within ABIE41_RS01230at 247.411 kb on + strand, within ABIE41_RS01230at 247.412 kb on - strand, within ABIE41_RS01230at 247.825 kb on - strandat 248.173 kb on - strandat 248.277 kb on + strandat 248.277 kb on + strandat 248.277 kb on + strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.907 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
remove
244,267 + ABIE41_RS01225 0.74 +1.1
244,267 + ABIE41_RS01225 0.74 +0.2
244,267 + ABIE41_RS01225 0.74 +0.1
244,267 + ABIE41_RS01225 0.74 +0.5
244,267 + ABIE41_RS01225 0.74 -0.1
244,267 + ABIE41_RS01225 0.74 -0.1
244,267 + ABIE41_RS01225 0.74 +0.7
244,267 + ABIE41_RS01225 0.74 -1.2
244,267 + ABIE41_RS01225 0.74 -0.3
244,267 + ABIE41_RS01225 0.74 +0.8
244,267 + ABIE41_RS01225 0.74 +0.1
244,267 + ABIE41_RS01225 0.74 -0.4
244,267 + ABIE41_RS01225 0.74 +1.5
244,268 - ABIE41_RS01225 0.74 +0.2
244,268 - ABIE41_RS01225 0.74 -0.4
244,268 - ABIE41_RS01225 0.74 -0.1
244,268 - ABIE41_RS01225 0.74 +0.5
244,268 - ABIE41_RS01225 0.74 -0.0
244,268 - ABIE41_RS01225 0.74 +0.9
244,268 - ABIE41_RS01225 0.74 -0.2
244,268 - ABIE41_RS01225 0.74 -0.0
244,268 - ABIE41_RS01225 0.74 +0.3
244,268 - ABIE41_RS01225 0.74 -0.8
244,268 - ABIE41_RS01225 0.74 -0.0
244,268 - ABIE41_RS01225 0.74 -0.8
244,268 - ABIE41_RS01225 0.74 +0.7
244,268 - ABIE41_RS01225 0.74 +1.8
244,268 - ABIE41_RS01225 0.74 +0.4
244,268 - ABIE41_RS01225 0.74 -0.8
244,268 - ABIE41_RS01225 0.74 -0.9
244,268 - ABIE41_RS01225 0.74 +0.7
244,327 + ABIE41_RS01225 0.76 -1.7
244,328 - ABIE41_RS01225 0.76 -0.7
244,352 + ABIE41_RS01225 0.76 +0.4
244,352 + ABIE41_RS01225 0.76 +0.8
244,352 + ABIE41_RS01225 0.76 +0.5
244,352 + ABIE41_RS01225 0.76 +0.7
244,352 + ABIE41_RS01225 0.76 +0.5
244,352 + ABIE41_RS01225 0.76 -1.0
244,352 + ABIE41_RS01225 0.76 +0.2
244,352 + ABIE41_RS01225 0.76 +0.5
244,353 - ABIE41_RS01225 0.76 +1.0
244,353 - ABIE41_RS01225 0.76 +0.2
244,353 - ABIE41_RS01225 0.76 -0.2
244,353 - ABIE41_RS01225 0.76 +0.3
244,353 - ABIE41_RS01225 0.76 -0.4
244,474 + ABIE41_RS01225 0.80 +2.1
244,475 - ABIE41_RS01225 0.80 -0.0
244,475 - ABIE41_RS01225 0.80 -0.2
244,591 + ABIE41_RS01225 0.84 -0.9
244,592 - ABIE41_RS01225 0.84 -0.3
244,609 + ABIE41_RS01225 0.84 -0.1
244,610 - ABIE41_RS01225 0.84 +0.8
244,681 + ABIE41_RS01225 0.86 +0.9
244,682 - ABIE41_RS01225 0.86 -0.9
244,682 - ABIE41_RS01225 0.86 +0.4
244,682 - ABIE41_RS01225 0.86 -0.2
244,708 + ABIE41_RS01225 0.87 +2.5
244,708 + ABIE41_RS01225 0.87 +0.7
244,708 + ABIE41_RS01225 0.87 -2.3
244,708 + ABIE41_RS01225 0.87 -0.2
244,708 + ABIE41_RS01225 0.87 +1.1
244,708 + ABIE41_RS01225 0.87 -0.1
244,709 - ABIE41_RS01225 0.87 -0.1
244,709 - ABIE41_RS01225 0.87 -0.7
244,709 - ABIE41_RS01225 0.87 +0.7
244,709 - ABIE41_RS01225 0.87 -1.3
244,709 - ABIE41_RS01225 0.87 +0.4
244,711 + ABIE41_RS01225 0.87 +1.3
244,711 + ABIE41_RS01225 0.87 +1.3
244,711 + ABIE41_RS01225 0.87 +0.4
244,711 + ABIE41_RS01225 0.87 -0.5
244,711 + ABIE41_RS01225 0.87 -2.0
244,712 - ABIE41_RS01225 0.87 -0.1
244,712 - ABIE41_RS01225 0.87 -0.6
244,712 - ABIE41_RS01225 0.87 -1.6
244,712 - ABIE41_RS01225 0.87 -0.2
244,885 + +0.5
244,885 + -0.4
244,885 + -0.1
244,885 + +0.1
244,886 - -0.2
244,886 - +1.6
244,886 - -0.2
244,900 + +0.1
244,927 + -0.1
244,927 + -0.1
244,928 - -0.0
244,972 + -0.5
244,972 + -1.5
244,972 + -0.2
244,972 + +0.4
244,972 + -1.2
244,972 + +1.4
244,973 - -1.1
245,053 + -0.1
245,053 + -0.0
245,053 + +1.8
245,054 - +0.2
245,054 - +0.1
245,054 - -0.5
245,054 - -1.3
245,054 - -1.1
245,054 - +0.0
245,054 - -1.4
245,129 + -0.8
245,129 + +1.3
245,130 - +0.2
245,130 - -0.0
245,130 - -1.6
245,382 + +0.0
245,409 + -2.3
245,409 + +0.6
245,409 + +0.3
245,409 + -0.6
245,410 - +0.9
245,410 - -1.9
245,410 - -0.4
245,410 - -0.3
245,417 + +0.4
245,526 + ABIE41_RS01230 0.14 +0.1
245,526 + ABIE41_RS01230 0.14 +0.9
245,544 + ABIE41_RS01230 0.14 +1.9
245,544 + ABIE41_RS01230 0.14 +0.4
245,545 - ABIE41_RS01230 0.14 -1.8
245,595 + ABIE41_RS01230 0.16 +0.6
245,757 + ABIE41_RS01230 0.22 -0.4
245,758 - ABIE41_RS01230 0.22 -0.3
245,758 - ABIE41_RS01230 0.22 -0.8
245,796 + ABIE41_RS01230 0.23 -0.3
245,796 + ABIE41_RS01230 0.23 -0.1
245,796 + ABIE41_RS01230 0.23 +0.3
245,796 + ABIE41_RS01230 0.23 +0.7
245,796 + ABIE41_RS01230 0.23 +0.3
245,797 - ABIE41_RS01230 0.23 +0.8
245,797 - ABIE41_RS01230 0.23 -1.9
245,797 - ABIE41_RS01230 0.23 +0.3
245,797 - ABIE41_RS01230 0.23 -0.9
245,802 + ABIE41_RS01230 0.23 +0.3
245,802 + ABIE41_RS01230 0.23 +0.2
245,802 + ABIE41_RS01230 0.23 -1.1
245,802 + ABIE41_RS01230 0.23 -0.3
245,802 + ABIE41_RS01230 0.23 -2.0
245,802 + ABIE41_RS01230 0.23 -0.2
245,802 + ABIE41_RS01230 0.23 -3.3
245,803 - ABIE41_RS01230 0.23 +1.9
245,803 - ABIE41_RS01230 0.23 +0.0
245,803 - ABIE41_RS01230 0.23 -1.0
245,803 - ABIE41_RS01230 0.23 -0.8
245,803 - ABIE41_RS01230 0.23 -1.3
245,835 + ABIE41_RS01230 0.24 +0.7
245,835 + ABIE41_RS01230 0.24 +0.8
245,835 + ABIE41_RS01230 0.24 -0.1
245,835 + ABIE41_RS01230 0.24 +0.9
245,836 - ABIE41_RS01230 0.24 +1.4
245,836 - ABIE41_RS01230 0.24 -0.2
246,039 + ABIE41_RS01230 0.31 -0.2
246,040 - ABIE41_RS01230 0.31 -0.3
246,066 + ABIE41_RS01230 0.32 -1.9
246,066 + ABIE41_RS01230 0.32 -1.4
246,067 - ABIE41_RS01230 0.32 +0.1
246,067 - ABIE41_RS01230 0.32 +1.9
246,067 - ABIE41_RS01230 0.32 -0.1
246,067 - ABIE41_RS01230 0.32 -0.4
246,067 - ABIE41_RS01230 0.32 -0.1
246,067 - ABIE41_RS01230 0.32 -0.5
246,384 + ABIE41_RS01230 0.43 +0.3
246,384 + ABIE41_RS01230 0.43 +0.0
246,384 + ABIE41_RS01230 0.43 +0.3
246,385 - ABIE41_RS01230 0.43 +1.9
246,385 - ABIE41_RS01230 0.43 -0.0
246,492 + ABIE41_RS01230 0.47 -0.6
246,492 + ABIE41_RS01230 0.47 -0.6
246,492 + ABIE41_RS01230 0.47 -0.1
246,493 - ABIE41_RS01230 0.47 -1.1
246,538 - ABIE41_RS01230 0.48 -0.9
246,538 - ABIE41_RS01230 0.48 -2.0
246,868 + ABIE41_RS01230 0.59 -0.3
246,869 - ABIE41_RS01230 0.59 +0.9
246,869 - ABIE41_RS01230 0.59 +0.0
246,869 - ABIE41_RS01230 0.59 -0.4
246,869 - ABIE41_RS01230 0.59 -1.2
247,411 + ABIE41_RS01230 0.78 +0.7
247,411 + ABIE41_RS01230 0.78 +0.3
247,411 + ABIE41_RS01230 0.78 +0.2
247,412 - ABIE41_RS01230 0.78 -0.4
247,825 - -0.6
248,173 - -0.3
248,277 + -0.3
248,277 + +0.2
248,277 + +1.3
248,278 - +0.9
248,278 - -0.2
248,278 - -0.3
248,278 - -0.0
248,278 - +0.0
248,907 + -1.1

Or see this region's nucleotide sequence