Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21335 and ABIE41_RS21340 are separated by 30 nucleotides ABIE41_RS21340 and ABIE41_RS21345 are separated by 33 nucleotides ABIE41_RS21345 and ABIE41_RS21350 are separated by 40 nucleotides ABIE41_RS21350 and ABIE41_RS21355 are separated by 3 nucleotides
ABIE41_RS21335: ABIE41_RS21335 - CmpA/NrtA family ABC transporter substrate-binding protein, at 4,385,935 to 4,386,981
_RS21335
ABIE41_RS21340: ABIE41_RS21340 - ANTAR domain-containing protein, at 4,387,012 to 4,387,596
_RS21340
ABIE41_RS21345: ABIE41_RS21345 - HupE/UreJ family protein, at 4,387,630 to 4,388,190
_RS21345
ABIE41_RS21350: ABIE41_RS21350 - urease accessory protein UreG, at 4,388,231 to 4,388,863
_RS21350
ABIE41_RS21355: ABIE41_RS21355 - DUF3995 domain-containing protein, at 4,388,867 to 4,389,304
_RS21355
Position (kb) 4387
4388
4389 Strain fitness (log2 ratio) -1
0
1
2 at 4386.646 kb on - strand, within ABIE41_RS21335 at 4386.807 kb on + strand, within ABIE41_RS21335 at 4386.807 kb on + strand, within ABIE41_RS21335 at 4386.808 kb on - strand, within ABIE41_RS21335 at 4386.808 kb on - strand, within ABIE41_RS21335 at 4386.808 kb on - strand, within ABIE41_RS21335 at 4386.808 kb on - strand, within ABIE41_RS21335 at 4386.808 kb on - strand, within ABIE41_RS21335 at 4387.103 kb on + strand, within ABIE41_RS21340 at 4387.103 kb on + strand, within ABIE41_RS21340 at 4387.103 kb on + strand, within ABIE41_RS21340 at 4387.104 kb on - strand, within ABIE41_RS21340 at 4387.104 kb on - strand, within ABIE41_RS21340 at 4387.104 kb on - strand, within ABIE41_RS21340 at 4387.291 kb on - strand, within ABIE41_RS21340 at 4387.292 kb on + strand, within ABIE41_RS21340 at 4387.292 kb on + strand, within ABIE41_RS21340 at 4387.292 kb on + strand, within ABIE41_RS21340 at 4387.292 kb on + strand, within ABIE41_RS21340 at 4387.292 kb on + strand, within ABIE41_RS21340 at 4387.293 kb on - strand, within ABIE41_RS21340 at 4387.293 kb on - strand, within ABIE41_RS21340 at 4387.293 kb on - strand, within ABIE41_RS21340 at 4387.293 kb on - strand, within ABIE41_RS21340 at 4387.776 kb on - strand, within ABIE41_RS21345 at 4388.080 kb on + strand, within ABIE41_RS21345 at 4388.081 kb on - strand, within ABIE41_RS21345 at 4388.490 kb on + strand, within ABIE41_RS21350 at 4388.490 kb on + strand, within ABIE41_RS21350 at 4388.490 kb on + strand, within ABIE41_RS21350 at 4388.491 kb on - strand, within ABIE41_RS21350 at 4388.491 kb on - strand, within ABIE41_RS21350 at 4388.727 kb on + strand, within ABIE41_RS21350 at 4388.728 kb on - strand, within ABIE41_RS21350 at 4388.728 kb on - strand, within ABIE41_RS21350 at 4388.757 kb on + strand, within ABIE41_RS21350 at 4388.928 kb on + strand, within ABIE41_RS21355 at 4388.928 kb on + strand, within ABIE41_RS21355 at 4388.928 kb on + strand, within ABIE41_RS21355 at 4388.928 kb on + strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355 at 4388.929 kb on - strand, within ABIE41_RS21355
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,386,646 - ABIE41_RS21335 0.68 +0.2 4,386,807 + ABIE41_RS21335 0.83 +0.2 4,386,807 + ABIE41_RS21335 0.83 -1.0 4,386,808 - ABIE41_RS21335 0.83 -0.6 4,386,808 - ABIE41_RS21335 0.83 +0.8 4,386,808 - ABIE41_RS21335 0.83 +1.9 4,386,808 - ABIE41_RS21335 0.83 -0.3 4,386,808 - ABIE41_RS21335 0.83 +0.2 4,387,103 + ABIE41_RS21340 0.16 -0.2 4,387,103 + ABIE41_RS21340 0.16 +0.7 4,387,103 + ABIE41_RS21340 0.16 +0.1 4,387,104 - ABIE41_RS21340 0.16 +0.5 4,387,104 - ABIE41_RS21340 0.16 +0.7 4,387,104 - ABIE41_RS21340 0.16 -0.0 4,387,291 - ABIE41_RS21340 0.48 +0.6 4,387,292 + ABIE41_RS21340 0.48 +0.7 4,387,292 + ABIE41_RS21340 0.48 +0.3 4,387,292 + ABIE41_RS21340 0.48 +0.6 4,387,292 + ABIE41_RS21340 0.48 +0.8 4,387,292 + ABIE41_RS21340 0.48 -1.4 4,387,293 - ABIE41_RS21340 0.48 +0.9 4,387,293 - ABIE41_RS21340 0.48 -0.2 4,387,293 - ABIE41_RS21340 0.48 -0.6 4,387,293 - ABIE41_RS21340 0.48 -1.7 4,387,776 - ABIE41_RS21345 0.26 -0.3 4,388,080 + ABIE41_RS21345 0.80 -0.8 4,388,081 - ABIE41_RS21345 0.80 -0.7 4,388,490 + ABIE41_RS21350 0.41 +0.5 4,388,490 + ABIE41_RS21350 0.41 +0.6 4,388,490 + ABIE41_RS21350 0.41 -1.1 4,388,491 - ABIE41_RS21350 0.41 -0.2 4,388,491 - ABIE41_RS21350 0.41 +0.9 4,388,727 + ABIE41_RS21350 0.78 +0.9 4,388,728 - ABIE41_RS21350 0.79 +0.4 4,388,728 - ABIE41_RS21350 0.79 +0.4 4,388,757 + ABIE41_RS21350 0.83 +0.3 4,388,928 + ABIE41_RS21355 0.14 -0.1 4,388,928 + ABIE41_RS21355 0.14 +0.5 4,388,928 + ABIE41_RS21355 0.14 +0.5 4,388,928 + ABIE41_RS21355 0.14 +0.4 4,388,929 - ABIE41_RS21355 0.14 +0.1 4,388,929 - ABIE41_RS21355 0.14 +0.6 4,388,929 - ABIE41_RS21355 0.14 +0.2 4,388,929 - ABIE41_RS21355 0.14 -0.2 4,388,929 - ABIE41_RS21355 0.14 -0.7 4,388,929 - ABIE41_RS21355 0.14 -0.9 4,388,929 - ABIE41_RS21355 0.14 +0.3
Or see this region's nucleotide sequence